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MacCHESS user publications |
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Anati, R.,
Bhattacharyya-Pakrasi, M., Pakrasi, H. B., and Adir, N.
Preliminary X-ray Crystallographic Analysis of MntC, a
Periplasmic Manganese Binding Component of a Mn Transporter from
Synechocystis sp PCC 6803. Proc. 12th International Congress
on Photosynthesis, Brisbane Australia , (2001).
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Gao, H-Q., P. L.
Boyer, S. G. Sarafianos, E. Arnold, and S. H. Hughes. The Role
of Steric Hindrance in 3TC Resistance of Human Immunodeficiency
Virus Type-1 Reverse Transcriptase. J. Mol. Bio., 300,
403-418, (...)
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Sarafianos, S. G., K. Das, C. Tantillo, A.D. Clark, Jr., J.
Ding, J. Whitcomb, P. L. Boyer, S. H. Hughes, and E. Arnold.
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with
a Polypurine Tract RNA:DNA. EMBO J., 20, 1449-1461, (...)
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Hsio, Y., J. Ding,
K. Das, A.D. Clark, Jr., P. L. Boyer, P. Lewi, P. A. J. Janssen,
J. P. Kleim, M. Rosner, S. H. Hughes, and E. Arnold. The
Lys103Asn Mutation of HIV-1 RT: a Novel Mechanism of Drug
Resistance. J. Mol. Biol., 309, 437-445, (2001).
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Das,
K., X. Xiong, H. Yang, C. E. Westland, C. S. Gibbs, S. G.
Sarafianos and E. Arnold. Molecular Modeling and Biochemical
Characterization Reveals the Mechanism of Hepatitis B Virus
Polymerase Resistance to Lamivudine (3TC) and Emtricitabine
(FTC). J. Virol., 75, 4771-4779, (2001).
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Boyer,
P. L., S. G. Sarafianos, E. Arnold, and S. H. Hughes. Selective
Excision of AZT by Drug-Resistant Human Immunodeficiency Virus
Reverse Transcriptase. J. Virol., 75, 4832-4842, (2001).
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Tachedjian, G., M. Orlova, S. G. Sarafianos, E. Arnold, and S.
P. Goff. Nonnucleoside Reverse Transcriptase Inhibitors are
Chemical Inducers of Dimerization of the Human Immunodeficiency
Type 1 Reverse Transcriptase. PNAS, 98, 7188-7193,
(2001).
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Ludovici, D. W., R. W. Kavash, M. J. Kukla, C. Y. Ho, H. Ye, B.
L. De Corte, K. Andries, M.-P. de Bethune, H. Azijn, R. Pauwels,
H. E. L. Moereels, J. Heeres, L. M. H. Koymans, M. R. de Jonge,
K. J. A. Van Aken, F. F. D. Daeyaert, P. Lewi, K. Das, E.
Arnold, and P. A. J. Janssen. Evolution of Anti-HIV Drug
Candidates. 2. Diaryltriazine (DATA) Analogs. Bioorg. Med.
Chem. Letters, 11(17), 2235-2239, (2001).
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Ludovici, D. W., M. J. Kukla, P. G. Grous, S. Krishnan, K.
Andries, M.-P. de Bethune, H. Azijn, R. Pauwels, E. De Clercq,
E. Arnold, and P. A. J. Janssen. Evolution of Anti-HIV Drug
Candidates 1. From*-Anilinophenylacetamide (*-APA) to
Imidoylthiourea (ITU). Bioorg. Med. Chem. Letters,
11(17), 2229-2234, (2001).
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Fitzgibbon, J. E., M. B. Dicola,
E. Arnold, K. Das, B. E. Sha, J. Pottage, R. Nahase, S. Gaur and
J. F. John Jr. HIV-1 reverse transcriptase mutations found in a
drug-experienced patient confer reduced susceptibility to
multiple nucleoside reverse transcriptase inhibitors.
Antiviral Therapy, 6, 231-238 (2001).
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Bilderback, D. H.,
Huang, R., Kriksunov, I. A. & Thiel, D. J.,
Microbeams for protein crystallography based on a glass
capillary. Proc. CHESS User's Mtg Mtg., Cornell
Univ.,Ithaca NY, June 12-13 abstract, (2001).
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C.
Brenner, P. Bieganowski, H.C. Pace and K. Huebner. The histidine
triad superfamily of nucleotide-binding proteins. Cellular
Physiology, 181, 179-187, (2001).
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H. C.
Pace & C. Brenner. The Nitrilase Superfamily: Classification,
Structure and Function Genome. Biology, 2 reviews,
0001.1-0001.9, (2001).
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M. A. Wilson and A.
T. Bruner. Characterization of conformational heterogeneity in
the 1.0 angstrom structure of Ca+2-calmodulin. Proc. CHESS
User's Mtg Mtg., Cornell University, Ithaca, NY June 12-13,
abstract, (2001).
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Deo, R.
C.,Sonenberg, N., and Burley, S. K. X-ray Structure of the Human
Hyperplastic Discs Protein: An Ortholog of the C-terminal
Domain. Science, 98, 4414-4419, (2001).
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Kielkopf, C. L., Rodionova, N. A., Green, M. R., and Burley, S.
K. A novel peptide recognition mode revealed by the x-ray
structure of a core U2AF35/U2AF65 heterodimer. Cell, 106,
595-605, (2001),
(see image).
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Bonanno,
J. B., Edo, C., Eswar, N., Pieper, U., Romanowski, M. J., Ilyin,
V., Gerchman, S. E., Kycia, H., Studier, F. W., Sali, A., and
Burley, S. K. Structural genomics of enzyes involved in Sterol/isoprenoid
biosynhesis. PNAS, USA, 98 , 12896-12901, (2001).
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K.
Kamada, J. De Angelis, R. G. Roeder, and S. K. Burley. Crystal
Structure of the C-terminal Domain of the RAP74 Subunit of Human
TFIIF. PNAS, 98, 3115-3120, (2001).
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Brown, J., Kim,
K-H., Jun, G., Greenfield, N., Dominguez, R., Volkmann, N.,
Hitchcock DeGrefori, S., and Cohen, C. Deciphering the design of
the tropomyosin molecule.
PNAS, 98, 8496-8501, (2001).
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Madrazo, J., Brown,
J., Dominguez, R., Medved, L., and Cohen, C. Atomic structure of
the bovine fibrinogen fragment E at 1.6A resolution. PNAS,
98, 11967-11972, (2001).
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Minakhim, L., Bhagat, S., Brunning, A., Campbell, E. A., Darst,
S. A, Ebright, R. H., Severinov, K. Bacterial RNA polymerase
subunit w and functional homologs and promote RNA polymerase
assembly. PNAS, USA, 98, 892-897, (2001).
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Weinkauf, S., Hunt,
J. F., Scheuring, J., Henry, L., Fak, J., Oliver, D. B., and
Deisenhofer, J. Conformational stabilization and crystallization
of the SecA translocation ATPase from Bacillus subtillis.
Acta Cryst., D, 57, 559-565 (2001).
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Eva S.
Istvan and Johann Deisenhofer. Structural Mechanism for Statin
Inhibition of HMG-CoA Reductase. Science, 292, 1160-1164,
(2001),
(see image).
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DeTitta,
G., Luft, J., Wolfley, J., Urban, N., and Collins, R.
Crystallization robotics. Proc. CHESS User's Mtg Mtg.,
Cornell University, Ithaca, NY June 12-13, abstract, (2001).
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Z. Dauter, M. Dauter
and K. R. Rajashankar. Phasing protein structures using rapid
soaked halides. Proc. CHESS User's Mtg Mtg., Cornell
University, Ithaca, NY June 12-13, abstract, (2001).
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Batey, R. T., Sagar,
M. B. & Doudna, J. A. Structural and energetic analysis of
nucleic acid recognition by a universally conserved protein from
the signal recognition particle. J. Mol. Biol.,
307, 229-246, (2001).
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Appleby, T. C. Mathews, I. I., Porcelli, M., Cacciapuoti, G.,
Ealick, S. E. Three-dimensional structure of a hyperthermophilic
5`-deoxy-5`methylthioadenosinephosphorylase from Sulfolobus
solfataricus. J. Biol. Chem., 276, 39232-39242, (2001).
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Peapus, D. H., Chiu,
H.-J., Campobasso, N., Reddick, J. J., Begley, T. P., and Ealick,
S. E. Structural characterization of the enzyme-substrate,
enzyme-intermediate, and enzyme-product complexes ot thiamin
phosphate synthase. Biochemistry, 40, 10103-10114,
(2001).
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Ealick,
S. E. Nucleoside phosphorylase. In Wiley Encyclopedia of
Molecular Medicine John Wiley & Sons, Inc., NY, 4,
2681-2693, (2001).
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Ealick, S. E. X-ray
detectors for macromolecular crystallography. In Methods in
Macromolecular Crystallography (Turk D. and Johnson L., eds.) IOS
Press, Amsterdam, NL, 43-54, (2001).
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Ni, Y. McPhie, P.,
Deacon, A. M., Ealick, S., and Coleman, W. G., Jr. Evidence that
NADP is the physiological cofactor of ADP-L
glycero-D-mannoheptose 6-epimerase. J. Biol. Chem., 276,
27329-27334, (2001).
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Ekstrom, J. L.,
Tolbert, W. D., Xiong, H., Pegg, A. E., and Ealick, S. E. The
crystal structure of the H243A mutant of S-adenosylmethionine
decarboxylase at 1.5A resolution nreveals a proenzyme ester
intermediate. Biochemistry, 40, 9495-9504, (2001).
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Tolbert, W. D., Ekstrom, J. L., Mathews, I. I., Secrist, J. A.
III, Kapoor, P., Pegg, A. E., and Ealick, S. E. The structural
basis for substrate specificity and inhibition of human S-adenosylmethionine
decarboxylase. Biochemistry, 40, 9484-9494, (2001).
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Gu, Y.
X., Liu, Y. D., Hao, Q., Ealick, S. E. & Fan, H. F.
Direct-Method Aided Phasing of MAD Data. Acta Cryst.,
D57, 250-253, (2001).
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Morra,
M., M. Simarro-Grande, M. Martin, A. S. Chen, A. Lanyi, O.
Silander, S. Calpe, J. Davis, T. Pawson, M. J. Eck, J. Sumegi,
P. Engel, S. C. Li, and C. Terhorst. Characterization of SH2D1A
missense mutations identified in X-linked lymphoproliferative
disease patients. J. Biol. Chem., 276(39), 36809-16,
(2001).
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Morollo,
A. A., Eck, M. J. Structure of the cooperative allosteric
anhtranilate synthase from Salmonella typhimurium. Nat.
Struct. Biol., 8(3), 243-47, (2001).
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Jeon, H. W. Meng, J.
Takagi, M. J. Eck, T. A. Springer, and S.C. Blacklow.
Implications for familial hypercholesterolemia from the
structure of the LDL receptor YWTD-EGF domain pair. Natr.
Struct. Biol. 8(6), 499-504, (2001).
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Poy,
F., M. Lepourcelet, R. A. Shivdasani, and M. J. Eck
Structure of a human Tef4-beta-catenin complex. Nat. Struct.
Biol. 8(12), 1053-7, (2001).
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Swaminnathan, G. J.,
Weaver, A. J., Loegering, D. A., Checkel, J. L., Leonides, D.
D., Gleich, G. J., and Acharya, K. R. Crystal structure of the
eosinophil major basic protein at 1.8A. An atypical lectin with
a paradigm shift in specificity. J. Biol. Chem., 276,
26197-26203, (2001).
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D.
Ghosh, P. Lala, M. Sawicki, D. J. Thiel Acetyl Xylanesterase
Biochemistry and Enzymology Derived from Sub-angstrom.
Crystallography Proc. CHESS User's Mtg Mtg., Cornell
Univ., Ithaca, NY, June 12-13, abstract, (2001).
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Sawicki,
M., Ghosh, D., Lala, P., Erman, M., Pangborn, W., Eyzaguirre,
J., Gutierrez, R., Jornvall, H., and Thiel, D. J. Ultra High
Resolution Refinement of Acetylxylan Esterase. J. Mol.
Biology, in preparation, () .
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Ghosh,
D., Sawicki, M., Lala, P., Erman, M., Pangborn, W., Eyzaguirre,
J., Gutierrez, R., Jornvall, H., and Thiel, D. J. Multiple
conformations of Catalytic Serine and Histidine in Acetylxylan
Esterase at 0.90A. Journal of Biological Chemistry, 276,
1159-11166 (2001).
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Walker,
J. R. Corpina, R .A., and Goldberg, J. Structure of the Ku
heterodimer bound to DNA and its implications for double-strand
break repair. Nature, 412, 607-614, (2001),
(see image).
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P. K.
Urayama. Techniques for high pressure macromolecular
crystallography and the effects of pressure on the structure of
sperm whale myoglobin. (need reference) in press, (2001).
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M. J.
Renzi, M. W. Tate, A. Ercan, E. Fontes, S. M. Gruner, C.
F.Powell, Y.Yue, A. G. MacPhee, S. Narananan, R. Cuenca, J.
Wang. Pixel Array Detectors for Time Resolved X-ray
Applications. Proc. CHESS User Mtg., Cornell Univ.,
Ithaca, NY, June 12-13, abstract, (2001).
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R. H.
Kapfer and S. M. Gruner . Protein Crystallography Under High
Pressure. Proc. CHESS User Mtg., Cornell Univ. Ithaca,
NY, June 12-13, abstract, (2001).
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Hamlin,
R., and Nielsen, C. A 315mm by 315mm 3x3 CCD array detector for
protein crystallography. Proc. CHESS User's Mtg Mtg.,
Cornell University, Ithaca, NY June 12-13, abstract, (2001).
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Hanson, B. L., Harp,
J. M., Kirschbaum, K., Parrish, D. A., Howards, A., Pinkerton,
A. A., and Bunick, G. J. The use of cryogenic helium in
macromolecular crystallography. Proc. CHESS User's Mtg Mtg.,
Cornell University, Ithaca, NY June 12-13, abstract, (2001).
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Hao, Q.
Two phasing methods: SAD and SAXS envelope. Proc. CHESS
User's Mtg Mtg., Cornell University, Ithaca, NY June 12-13,
abstract, (2001).
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Hao, Q.
Phasing from an envelope. Acta Cryst., D57, 1410-1414,
(2001).
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Tsujishita, Y., Guo,
S., Stolz, L., York, J. D., and Hurley, J. H. Specificity
determinants in phosphoinositide dephosphorylation: crystal
structure of an archetypal inositol polyphosphate 5-phosphatase.
Cell 105, 379-389, (2001).
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V. K.
Walker, M. J. Kuiper, M. G. Tyshenko, D. Doucet, S. P. Graether,
Y.-C. Liou, B. D. Sykes, Z. Jia, P. L. Davies and L. A. Graham.
Surviving Winter with Antifreeze Proteins: Studies on Budworm
and Beetles Insect Timing: Circadian Rhythmicity and Seasonality
(Denslinger, Giebultowicz and Saunders, Eds.). Elsevier
Science, Amsterdam, (2001).
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Ye, Q.,
Hyndman, D., Green, N., Li, X., Jia, Z., and Flynn, T. G.
Crystal structure of an aldehyde reductase Y50F mutant-NADP
complex and its implications for substrate binding.
Proteins, 44, 12-19, (2001).
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Q. Ye,
M. N. Rahman, M. L. Koschinsky and Z. Jia. High Resolution
Crystal Structure of Apolipoprotein (a)kringle IV type: Insights
Into Ligand Binding. Protein Science, 10(6),
1124-1129, (2001).
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Z. Jia,
M. Cottrill, G. P. Pal, D. Lee, M. Sung, C. W. Forsberg and J.
P. Phillips. Purification, Crystallization and Preliminary X-ray
Analysis of the Escherichia Coli Glucose-1-Phosphatase. Acta
Cryst., D57, 314-316, (2001).
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C. M. Hosfield, T.
Moldovenau, P. L. Davies, J. S. Elce, and Z. Jia Calpain Mutants
with Increased Ca2+ Sensitivity and Implications for the Role of
the C2-like Domain III. J. Biol. Chem., 276, 7404-7407,
(2001).
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Q. Ye,
D. Hyndman, N. Green, X. Li, Z. Jia and T. G. Flynn. The Crystal
Structure of an Aldehyde Reductase Y50F Mutant-NADP Complex and
its Implications for Substrate Binding. Chem. Biol. Interact.,
130-132, 651-658, (2001).
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Wood,
Z., Poole, L. B., and Karplus, P. A. Structure of intact AbpF
reveals a mirrored thioredoxin-like active site and implies
large domain rotations diring catalysis.
Biochemistry, 40, 3900-3911 (2001).
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Wood,
Z., Poole, L. B. and Karplus, P. A. X-ray crystal structure of
intact AhpC decamer of Salmonella Tryphimurium. Biochemistry,
40(13), 3900-3911, (2001).
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Finnerty, C. M., Charrier, V., Claiborne, and Karplus, P. A.
Crystallization and preliminary crystallographic analysis of the
soluble a-glycerophosphate oxidase from Streptococcus sp.
Acta Cryst., D58, 165-166, (2001).
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Wood, Z., Poole, L.
B., and Karplus, P. A. Structure of intact AbpF reveals a
mirrored thioredoxin-like active site and implies large domain
rotations diring catalysis. Biochemistry, 40, 3900-3911,
(2001).
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Vakulenko, S. B., D.
Golemi, B. Geryk, M. Suvorov, J. R. Knox., S. Mobashery and S.
A. Lerner. Mutational Replacement of Leu-293 in the Class C
Enterbacter cloacae P99 B-lactamase Confers Enhanced Resistance
to cefepime. Antimicrobial Agents & Chemother., 46(16),
1966-1970 , (2001).
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Crichlow, G. V., Nukaga, M., Doppalapudi, V., Buynak, J. D., and
Knox, J. R. Inhibiiton of Class C B-lactamases: Structure of a
Reaction Intermediate with a Cephem Sulfone. Biochemistry,
40(21), 6233-6239, (2001).
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Kuzin,
A. P., M. Nukaga, Y. Nukaga, A. Hujer, R. A. Bonomo, and J. R.
Knox. Inhibition of the SHV-1 B-lactamase by Sulfones:
Crystallographic Observation of Two Reaction Intermediates with
Taxobactam. Biochemistry, 40, 1861-1866, (2001).
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Sun,
T., M. Nukaga, K. Mayama, G. V. Crichlow, A. P. Kuzin and J. R.
Knox. Crystallization and preliminary x-ray study of
OXA-1, a class D _-lactamase. Acta Crystallogr., D57,
1912-1914, (2001).
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Webster, G., Leung,
T., Karthikeyan, S, Birrane, G. and Ladias, J. A. A.
Crystallographic characterization of the PDZ1 domain of the
Na+/H+ exchanger regulatory factor. Acta Cryst., D57,
714-716, (2001).
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Karthikeyan, S., Leung, T. and Ladias, J. A. A. Structural basis
of the Na+/H+ exchanger regulatory factor PDZ1 interaction with
the carboxyl-terminal region of the cystic fibrosis
transmembrane conductance regulator. J. of Bio. Chem.,
276, 19683-19686, (2001).
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Karthikeyan, S., Leung, T., Birrane, G., Webster, G. and Ladias,
J. A. A. Crystal structure of the PDZ1 domain of the human
Na+/H= exchanger regulatory factor provides insights into the
mechanism of carboxyl-terminal leucine recognition by class 1
PDZ domains. J. of Mol. Bio., 308, 963-973, (2001).
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Jiang,
Y., Pico, A., Cadene, M., Chait, B., MacKinnon, R. Structure of
the RCK Domain from E. coli K+Channel and Demonstration of its
Presence in the Human BK Channel. Neuron, 29, 593-601,
(2001).
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Morias-Cabral,
J. H., Zhou, Y., Kaufman, A., MacKinnon, R. Energetic
optimization of ion conduction rate by the K+ selectivity
filter. Nature, 414, 37-42, (2001).
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Zhou, Y., Morais-Cabral,
J. H., Kaufman, A., MacKinnon, R. Chemistry of ion coordination
and hydration revealed by a K+ channel-Fab complex at 2.0A
resolution. Nature, 414, 43-48, (2001),
(see image).
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Mao, C., Zhou, M,
Uckun, F. Crystal structure of Bruton`s tyrosine kinase domain
suggests a novel pathway for activation and provides insights
into the molecular basis of X-linked agammaglobulinaemia (XLA).
J. Biol. Chem., 276(44), 41435-43, (2001).
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Zhao,
K., Chai, X., Johnston, K., Clements, A., and Marmorstein, R.
Crystal structure of the mouse p53 core DNA-binding domain at
2.7A resolution. J. Biol. Chem., 276, 12120-12127,
(2001).
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Mo, Y.,
Ho, W., Johnston, K. and Marmorstein, R. Crystal structure of a
ternary SAP-1/SRF/c-fos SRE DNA complex. J. Mol. Biol.,
314, 505-516, (2001).
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Duda, D. M., Tu, C.,
Qian, M., Laipis, P., Agbandje-McKenna, M., Silverman, D. N.,
and
McKenna, R. Structural and kinetic analysis of the chemical
rescue of the proton transfer function of carbonic anhydrasell.
Biochemistry, 40, 1741-1748, (2001).
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Duda, D., C. Tu, D.
N. Silverman, J. Kalb (Gilboa), M. Agbandje-McKenna, R. McKenna.
Ultra-high Resolution X-ray Diffraction from Crystals of the
Kinetic Mutant of Human Carbonic Anhydrase II, His 64 Ala, and
its Complexes with Proton Acceptor/Donors. Protein and
Peptide Letters, 8, 63-67, (2001).
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R.
McKenna, D. Duda, C. Tu, L. Givindasamy, M. Agbandje-McKenna, D.
N. Silverman. Structural Analysis of the mechanism of chemical
rescue of proton transfer of the kinetic mutant of human
carbonic anhydrase II, His 64 Ala. Proc. CHESS User's Mtg
Mtg., Cornell Univ., Ithaca NY, June 12-13, abstract,
(2001).
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L.
Govindasamy, M. Agbandje-McKenna, M. R. Bubb, and R. McKenna.
Crystallization and preliminary x-ray crystallographic studies
of a dimeric form of rabbit muscle actin bound to the drub
latrunculin A and ATP. Proc. CHESS User's Mtg Mtg.,
Cornell Univ., Ithaca NY, June 12-13, abstract, (2001).
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Barton,
W. A., Lesniak, J., Biggins, J. B., Jeffrey, P. D., Jiang, J.,
Rajashankar, K. R., Thorson, J. S., and Nikolov, D. B.
Structure, Mechanism and Engineering of a
Nucleotidylyltransferase as a First Step Toward
Glycorandomization. Nature Struct. Biol., 8, 545-551,
(2001).
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Himanen,
J., Rajashankar, K., Lackmann, M., Cowan, C., Henkemeye, M., and
Nikolov, D. B. Crystal structure of an Eph receptor=ephrin
complex, Nature, 414, 486-491, (2001)
(see image).
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Finnin,
M. S., Donigian, J. R., Pavletich, N. P. Structure of the
histone deacetylase SIRT2. Nat. Struct. Biol., 8(7),
621-625, (2001).
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Chen, W. Unligil, U.
M., Rini, J .M., and Stanley, P. Independent Lec1A CHO
Glycosylation Mutants Arise from Point Mutations in N-Acetylglucosaminyltransferase
I that Reduce Affinity for Both Substrates. Molecular
Consequences Based on the Crystal Structure of GlcNAc-T1.
Biochemistry, 40, 8765-72, (2001).
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Shen, Q., Pringle,
D., Szebenyi, M., and Wang, J. Solving the crystallographic
phase problem with reference-beam diffraction. Rev. Sci.
Instrum. 73(3), 1646-1648, (2001).
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Chai,
J, Shiozaki, E., Srinivasula, S. M., Wu, Q., Datta, P., Alnemri,
E. S., and Shi, Y. Structural basis of Caspase-7 inhibition by
XIAP. Cell, 104, 769-780, (2001) .
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Wu, J.-W., Min, H.,
Jijie, C., Morgan, H., Li, C., Saw, K., Fairman, R., Muir, T.,
Massague, J. and Shi, Y. Crystal structure of a phosphorylated
Smad2: recognition of phosphoserine motif and insights on Smad
function in TGF-b signaling. Mol. Cell, 8, 1277-1289,
(2001).
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 |
Soelaiman, S.,
Jakes, K., Wu, N., Li, C. and Shoham, M.
Crystal Structure of Colicin E3: Implications for Cell Entry and
Ribosome Inactivation. Molecular Cell, 8,
1053-1062 (2001).
|
| |
 |
C. Erec
Stebbins, Jorge E. Galan. Maintenance of an unfolded polypeptide
by a cognate chaperone in bacterial type III secretion.
Nature, 414, 77-81, (2001),
(see image).
|
| |
 |
Franklin, M. C.,
Wang, J. and Steitz, T. A. Structure of the Replicating Complex
of a Pol Alpha Family DNA Polymerase. Cell, 105, 657-667,
(2001),
(see image).
|
| |
 |
M. W.
Tate. Area detector callibrations: considerations and
procedures. Proc. CHESS User's Mtg., Cornell Univ.,
Ithaca NY, June 12-13, abstract, (2001).
|
| |
 |
M. M.
Teeter, V. Lamzin, C. Jelsch, C. Lecomte and R. Blessing Ultra
high resolution structures: pushing the limits Proc. CHESS
User's Mtg., Cornell University, Ithaca, NY June 12-13,
abstract, (2001).
|
| |
 |
Sutton,
S. R., Hoffman, S. A., Thiel, D. J., Bilderback, D. H., Bajt,
S., and Jones, K. W. Synchrotron x-ray fluorescence microscopy
using a capillary x-ray concentrator. J. of Synch. Rad. ,
in press, (2001) .
|
| |
 |
Liu,
X., Szebenyi, D. M. E., Thiel, D. J., and Stover, P. J.
Cytoplasmic Serine Hydroxymethyltransferase: Properties of an
Alternative mRNA Splice Variant. Biochemistry, in press,
(2001).
|
| |
 |
T. Xiang, A. M.
Deacon, M. Koshy, I. A. Kriksunov, X. Lei and D. J. Thiel.
Cystal Structure of a Heat Resilient Phytase from Asprgillus
fumigatus at 1.5A Resolution. Proc. CHESS User's Mtg.,
Cornell Univ., Ithaca, NY, June 12-13 abstract, (2001).
|
| |
 |
Ghosh,
D., Sawicki, M., Lala, P., Erman, M., Pangborn, W., Eyzaguirre,
J., Gutierrez, R., Jornvall, H., and Thiel, D. J. Multiple
conformations of Catalytic Serine and Histidine in Acetylxylan
Esterase at 0.90A. Journal of Biological Chemistry, 276,
1159-11166 (2001).
|
| |
 |
D.
Ghosh, P. Lala, M. Sawicki, D. J. Thiel. Acetyl Xylanesterase
Biochemistry and Enzymology Derived from Sub-angstrom.
Crystallography Proc. CHESS User's Mtg Mtg., Cornell
Univ., Ithaca, NY, June 12-13 abstract, (2001).
|
| |
 |
D. M .F. van Aalten,
C. C. DiRusso and J. Knudsen. The Structural Basis of Acyl
Coenzyme A-dependent Regulation of the Transcription Factor FadR.
EMBO J., 20, 2041-2050, (2001).
|
| |
 |
Swaminnathan, G. J.,
Weaver, A. J., Loegering, D. A., Checkel, J. L., Leonides, D.
D., Gleich, G. J., and Acharya, K. R. Crystal structure of the
eosinophil major basic protein at 1.8A. An atypical lectin with
a paradigm shift in specificity. J. Biol. Chem., 276,
26197-26203, (2001).
|
| |
 |
A.
Weaver, D. O. Toft. Rhombehedral Human Tsp23: a crystallographic
puzzle. Proc. CHESS User's Mtg Mtg., Cornell Univ.,
Ithaca, NY, June 12-13, abstract, (2001).
|
| |
 |
Fan, Q.
R., Long, E. O., Wiley, D. C. Crystal Structure of the human
natural killer cell inhibitory receptor KIR2DL1-HLA-Cw4 complex.
Nature Immunology, 2, 452-460, (2001).
|
| |
 |
Tanski, J. M.,
Wolczanski, P. T. A covalent vanadium (III)2-dimensional network
and vanadyl chains linked by aryldioxides. Inorgan. Chem., 40,
346-353, (2001).
|
| |
 |
Tanski,
J. M., Wolczanski, P. T. A covalent vanadium (III)2-dimensional
network and vanadyl chanis linked by aryldioxides. Inorg.
Chem., 40, 2026-2033, (2001).
|
| |
 |
Xu, G. Girilli, M.
Huang, Y., Rich, R. L. Myszka, D. G. and Wu, H.
Covalent inhibition revealed by the crystal structure of the
p35/caspase-8 complex. Nature, 410, 494, (2001).
|
| |
 |
M.
Pioletti, F. Schluenzen, J. Harms, R. Zarivach, M. Glueman, H.
Aviula, A. Bashan, H. Bartels, T. Auerbach, C. Jacobi, T.
Hartsch, and A. Yonath. Crystal structures of complexes of the
small ribosomal subunit with tetracycline, edeine and IF3.
EMBO J., 20, 1829-1839, (2001).
|
| |
 |
Yang,
J., Chen, Z., Niu, T., Liang, X., Zhao, Z. and Zhou, G. W.
Protein tyrosine phosphatase SHP-1 specifically recognizes
C-terminal. J. Cell. Biochem., in press, (2001).
|
| |
top |
|
| |
 |
Anati,
R. and Adir, N. Crystallization of Dimers of the
Manganese-stabilizing Protein of Photosystem II.
Photosynthesis Research, 64, 167-177, (2000).
|
|
 |
Viadiu,
H. and Aggarwal, A. K. Structure of BamHI bound to non-specific
DNA: a model for DNA sliding. Mol. Cell, 5,
889-895, (2000).
|
|
 |
Viadiu, H., Kucera, R., Schildkraut,
I.and Aggarwal, A. K. Crystallization of restriction
endonuclease BamHI with non-specific DNA. J. Struct. Biol.,
130, 81-85, (2000).
|
|
 |
Scully, K., Jacobson, E. M., Jepsen,
K., Lunyak, V., Viadiu, H., Carriere, C., Rose, D. W., Hooshmand,
F., Aggarwal, A. K. Allosteric effects of Pit01 DNA sites on
long-term repression in cell-type specifications. Science,
290, 1127-1132, (2000).
|
|
 |
Boyer, P. L., S. G. Sarafianos, E.
Arnold and S. H. Hughes. Analysis of Mutations at Positions 115
and 116 in the dNTP Binding Site of HIV-1 Reverse Transcriptase.
PNAS., 97, 3056-3061, (2000).
|
|
 |
Bilderback, D. H., Freund, A. K., Knapp, G. S., and Mills, D. M.
The historical development of cryogenically-cooled
monochromators for third-generation synchrotron radiation
sources. J. of Synch. Rad., 7, 43-60, (2000).
|
|
 |
Pace, H. C., Hodawadekar, S. C.,
Draganescu, A., Huang, J., Bieganowski, P., Pekarsky, Y., Croce,
C. M. & Brenner, C. Crystal structure of worm NitFhit reveals
that a Nit tetramer binds two Fhit dimers. Current Biology,
10, 607-617, (2000).
|
|
 |
J.
Marcotrigiano, I. B. Lomakin, N. Sonenberg, T. V. Pestova, C. U.
T. Hellen, and S. K. Burley. A Conserved HEAT Domain within
eIF4G Directs Assembly of the Translation Initiation Machinery.
Molecular Cell, 7, 193-203, (2000).
|
|
 |
A. Roll-Mecak,
C. Cao, T. E. Dever, and S. K. Burley X-ray Structures of the
Universal Translation Initiation Factor IF2/eIF5B:
Conformational Changes on GDP and GTP Binding. Cell, 103,
781-792, (2000).
|
|
 |
Groft,
C. E., Beckmann, R., Sali, A., and Burley, S. K. Crystal
Strucure of Ribosome Anti-association Factor eIF6. Nature
Structural Biology, 7, 1156-1164, (2000).
|
|
 |
Lewis,
H. A., Musunuru, K., Jensen, K. B., Edo, C., Darnell, R. B.,
Burley, S. K. Sequence specific RNA binding by a Nova KH domain:
implications for paraneoplastic disease and fragile x syndrome.
Cell, 100, 323-332, (2000).
|
|
 |
Gajiwala,
K. S., Burley, S. K. HDEA, a perplasmic protein that supports
acid resistance in pathogenic enteric bacteria. Journal of
Molecular Biology, 295, 605-612, (2000).
|
|
 |
Gajiwala, K. S., Chen, H., Cornille,
F., Roques, B. P., Reith, W., Mach, B., Burley, S. K. Structure
of a winged-helix protein reveals a new mode of DNA binding.
Nature, 403, 916-921, (2000).
|
|
 |
Hoffman, G. R., Nassar, N., and
Cerione, R. A. Structure of the Rho family GTP-binding protein
Cdc42 in complex with the multifunctional regulator GDI, Cell,
100, 345-356, (2000).
|
|
 |
Argiriadi, M. A., Morisseau, C., Goodrow, M. H., Dowdy, D. L.,
Hammock, B. D., and Christianson, D. W. Binding of Alkylurea
Inhibitors to Epoxide Hydrolase Implicates Active Site Tyrosines
in Substrate Activation, J. Biol. Chem., 275(20),
15265-15270, (2000).
|
|
 |
Sandler, B. H., Nikonova, L., Leal,
W. S., Clardy, J. Sexual attraction in the silkworm moth:
structure of the pheromone-binding-protein-bombykol complex.
J. Chem. Biol. , 7, 143-151, (2000).
|
|
 |
Bellizzi,
J. J. III, Widom, J., Kemp, C., Lu, J. Y., Das, A. K., Hofmann,
S. L., Clardy, J. The crystal structure of palmitoyl protein
thioesterase 1 and the molecular basis of infantile neuronal
ceroid lipofuscinosis. PNAS, 97, 4573-4578, (2000).
|
|
 |
Liu, S., Neidhardt, E. A., Grossman,
T. H., Ocain, T., Clardy, J. Structure of human dihydroprotate
dehydrogenase in complex with antiproliferative agents.
Structure, 8, 25-35, (2000).
|
|
 |
Das, A.
K., Bellizzi, J. J., Tandel, S., Biehl, E., Clardy, J., Hofmann,
S. L. Structural Basis for the Insensitivity of a Serine Enzyme
(palmitoyl-protein thioesterase) to Phenylmethylsulfonyl
Fluoride. Biol. Chem., 275, 23847-23851, (2000).
|
|
 |
J. H.
Brown, N. Volkmann, G. Jun, A. H. Henschen-Edman, and C. Cohen.
The crystal structure of modified bovine fibrinogen. PNAS,
97(1), 85-90, (2000).
|
|
 |
Houdusse, A., Szent-Gyorgyi, A. G.
and Cohen, C. Three Conformational States of Scallop S2. PNAS,
97(21), 11238-11243, (2000).
|
|
 |
Li, Y.,
Love, M., Putkey, J., and Cohen, C. Bepridil opens the
regulatory N-terminal lobe of cardiac troponin C, PNAS,
97, 5140-45, (2000).
|
|
 |
Darst,
S. A. Bacterial RNA Polymerase.Curr. Opinion Struct. Biol., 11,
155-162, (2000). |
|
 |
Batey,
R. T., Rambo, R. P., Lucast, L., Rha, B. and Doudna, J. A.
Crystal structure of the ribonucleoprotein core of the signal
recognition particle. Science, 287, 1232-1239, (2000).
|
|
 |
Ferre-d`Amare`, A. R., and Doudna, J. A. Crystallization and
structure determination of a hepatitis delta virus ribozyme: Use
of the RNA-binding protein U1A as a crystallization module.
J.Mol. Biol., 295, 541-556, (2000).
|
|
 |
Campobasso, N., Mathews, I. I.,
Begley, T. P., and Ealick, S. E. Crystal structure of
4-methyl-5-b-hydroxyethylthiazole kinase from bacillus subtilis
at 1.5A resolution. Biochemistry, 39, 7868-7877, (2000).
|
|
 |
Deacon,
A. M., Ni, Y. S., Coleman, W. G. Jr., and Ealick, S. E.
The crystal structure of ADP-L-glycero-D-mannoheptose
6-epimerase: catalysis with a twist. Structure, 8,
453-462, (2000).
|
|
 |
Thiel,
D. J., le Du, M,. Walter, R. L., D`Arcy, A., Chene C.,
Fontoulakis, M., Garotta, G., Winkler, F., and Ealick, S. E.
Observation of an Unexpected Third Receptor Molecule in the
Crystal Structure of Human Interferon-gamma Receptor Complex.
Structure, 8, 927-936, (2000).
|
|
 |
Schumacher, M.A., Scott, D. M., Mathews, I. I., Ealick, S. E.,
Roos, D.S., Ullman, B., and Brennan, R. G. Crystal structures of
Toxoplasma gondii adenosine kinase reveal a novel catalytic
mechanism and prodrug binding. J. Mol. Biol., 298,
875-893, (2000).
|
|
 |
Deacon,
A. M., Ni, Y. S., Coleman, W. G. Jr., and Ealick, S. E. The
crystal structure of ADP-L-glycero-D-mannoheptose 6-epimerase:
catalysis with a twist. Structure, 8, 453-462, (2000).
|
|
 |
Kappock,
T. J., Ealick, S. E., and Stubbe J. Modular evolution of the
purine biosynthetic pathway. Curr. Opin. Chem. Biol., 4,
567-572, (2000).
|
|
 |
Huang, X., Poy, F., Zhang, R.,
Joachimiak, A., Sudol, M., Eck, M. J. Structure of a WW domain
containing fragment of dystrophin in complex with beta-dystorglycan.
Nat. Struct. Biol., 7(8), 634-38, (2000).
|
|
 |
Hollis,
T., Ichikawa, Y., & Ellenberger, T. DNA bending and a flip-out
mechanism for base excision by the helix-hairpin-helix DNA
glycosylase. EMBO J., 19, 758-766, (2000).
|
|
 |
Kwon, H. J., Bennick, M., Demple,
B., & Ellenberger, T. Crystal structure of the Escherichia coli
Rob transcription factor complexed to DNA. Nature Structural
Biology, 7, 424-430, (2000).
|
|
 |
Sawaya, M. R., Guo, G., Tabor, S.,
Richardson, C .C., & Ellenberger, T. Crystal structure of the
helicase domain from the replicative helicase-primase of
bacteriophage T7. Cell, 5, 557-567, (2000).
|
|
 |
Buboltz,
J. T., and Feigenson, G. W. Detection of coexisting gel and
fluid phases by equilibrium surface pressure analysis.
Langmuir, 16, 3606-3611, (2000).
|
|
 |
Khan, A. R., Baker, B. M., Ghosh,
P., Biddison, W. E. and Wiley, D. C. The structure and stability
of an HLA-A*0201/octameric tax peptide complex with an empty
conserved peptide-N-terminal binding site. J. of Immunology,
in press (2000).
|
|
 |
Goldstein, B. M. and Colby, T. D.
Conformational constraints in NAD analogs: implications for
dehydrogenase binding and specificity. Advances in Enzyme
Regulation, 40, 405-426, (2000).
|
|
 |
Gruner, S.M. Synchrotron radiation
and detectors: synergists in a dance. Trans. Amer. Cryst.
Assoc., 34, 11-25, (2000).
|
|
 |
Tate, M., Eikenberry, E., and S. M.
Gruner. CCD detectors.
In International Tables for Crystallography. M. Rossmann & E.
Arnold, eds. International Union of Crystallography, by
Kluwer Acad. Pub., London F, 148-153, (2000).
|
|
 |
Gruner, S. M., Eikenberry, E., Tate,
M. Comparison of x-ray detectors.
In International Tables for Crystallography. M. Rossmann & E.
Arnold, eds. International Union of Crystallography, by
Kluwer Acad. Pub., London F, 143-147;152-153, (2000).
|
|
 |
Sol M. Gruner, Edward L. Hutchins,
Christopher K. Ober, Lewis J. Fetters, Pamela J. Wright, Xuefa
Li. Mesoporous structures via block copolymers with a labile
block.
ACS Meeting, San Francisco National Meeting, 27
March abstract, (2000).
|
|
 |
Zhou, G., Ferrer, M., Chopra, R.,
Kapoor, T. M., Strassmaier, T., Weissenhorn, W., Skehel, J. J.,
Oprian, D., Schreiber, S. L., Harrison, S. C. and Wiley, D. C.
The structure of an HIV-1 specific cell entry inhibitor in
complex with the HIV-1 gp41 trimeric core. Biorganic and
Medicinal Chemistry, in press (2000).
|
|
 |
Lawrence, C. M., Ray, S., Babyonyshev, M., Gallusser, R.,
Harrison, S. C. Structure of the ectodomain of human transferrin
receptor. Science, 286, 779-782, (2000).
|
|
 |
Reinisch, K. M., Nibert, M.,
Harrison, S. C. The reovirus core: structure of a complex
molecular machine. Nature, 404, 960-967, (2000),
(see image).
|
|
 |
Chen, X.
S., Garcea, R., Goldbert, I., Harrison, S. C. Structure of small
virus-like particles assembled from the L1 protein of human
papillomavirus 16. Molecular Cell, 5, 557-567, (2000).
|
|
 |
Ye, Q.,
Li, X., Hyndman, D., Flynn, T.G., and Jia, Z. Crystal structure
of CHO reductase , a member of the aldo-keto reductase
superfamily. Proteins, 38, 41-48, (2000).
|
|
 |
Y.-C. Liou, P. L. Davies and Z. Jia.
Crystallization and Preliminary X-ray Analysis of Insect
Antifreeze Protein from the Beetle Tenebrio Molitor. Acta
Cryst., D56, 354-356, (2000).
|
|
 |
Savvides,
S., Boone, T. & P. A. Karplus. Crystal Structure of the Flt3
Ligand: Common Recognition Features of Helical Bundles and
Cystine Knots. Nat. Struct. Biol., 7, 486-491, (2000).
|
|
 |
Pearson,
M., Reczek, D., Bretscher, A. & Karplus, P. A. Structure of the
ERM Protein Moesin Reveals the FERM Domain Fold Masked by an
Extended Actin Binding Tail Domain. Cell, 101, 259-270,
(2000).
|
|
 |
Poole,
L. B., Reynolds, C. M., Wood, Z., Karplus, P. A., Ellis, H. R. &
Li, Calzi, M. AhpF and Other NADH:Peroxiredoxin Oxidoreductases,
Homologues of Low Mr Thioredoxin Reductase. Eur. J. Biochem.,
267, 1-9, (2000).
|
|
 |
Healy,
V. L., I. A. D. Lessard, D. I. Roper, J. R. Knox and C. T.
Walsh. Vancomycin resistance in enterococci: Reprogramming
of the D-alanine:D-alanine ligases in bacterial peptidoglycan
biosynthesis. Chem. & Biol., 7, R123-R126, (2000).
|
|
 |
Kuzin,
A. P., S. Tao, J. Jorczak-Baillass, V. L. Healy, C. T. Walsh and
J. R. Knox. Enzymes of vancomycin resistance. The structure of
D-alanine:D-lactate ligase of naturally-resistant Leuconostoc
mesenteroides. Structure, 8, 463-470, (2000).
|
|
 |
Jiang,
Y. and MacKinnon, R. The barium site in a potassium channel by
x-ray crystallography. J. Gen. Phys., 115:3, 269-272,
(2000).
|
|
 |
Gulbis, J. M., Zhou, M., Mann, S.
and MacKinnon, R. Structure of the Cwc1046w cytoplasmic *
subunit0T1 assembly of voltage dependent K+ channels. Science,
289, 123-127, (2000),
(see image).
|
|