|
MacCHESS user publications
|
| |
 |
Kalyan Das, Joseph D. Bauman,
Arthur D. Clark, Jr., Yulia V. Frenkel, Paul J. Lewi, Aaron J.
Shatkin, Stephen H. Hughes, and
Eddy Arnold. High-resolution structures of HIV-1 reverse
transcriptase/TMC278 complexes: Strategic flexibility explains
potency against resistance mutations. PNAS, 105(5),
1466-1471, 2008.
|
| |
 |
Tempel W., Tong Y., Dimov S.,
Bochkarev A., Park H. First crystallographic models of
human TBC domains in the context of a
family-wide structural analysis. Proteins, 71(1),
497-502, 2008
|
| |
 |
Clayton G. M., Altieri S.,
Heginbotham L., Unger V. M., Morais-Cabral J. H. Structure of
the transmembrane regions of a bacterial cyclic
nucleotide-regulated channel. PNAS, 105(5), 1511-5, 2008
|
| |
 |
Cherezov V., Liu W., Derrick J.
P., Luan B., Aksimentiev A., Katritch V., Caffrey M. In
meso crystal structure and docking simulations suggest an
alternative proteoglycan binding site in the OpcA outer membrane
adhesin. Proteins, 71(1), 24-34, 2008
|
| |
 |
Sung Haeng Lee, Astrid Weins,
David B. Hayes, Martin R. Pollak and Roberto
Dominguez.
Crystal Structure of the Actin-Binding Domain of α-Actinin-4
Lys255Glu Mutant Implicated in Focal Segmental
Glomerulosclerosis. JMB, 376
(2), 317-324, 2008
|
| |
 |
Huang Q, Hong X, Hao Q.
SNAP-25 is also an iron-sulfur protein.
FEBS Lett., 582(10), 1431-6, 2008
|
| |
 |
Lyann Sim, Roberto Quezada-Calvillo,
Erwin E. Sterchi, Buford L. Nichols and David R. Rose. Human intestinal
maltase-glucoamylase: crystal structure of the N-terminal
catalytic subunit and basis of inhibition and substrate
specificity. JMB, 375(3), 782-92, 2008
|
| |
 |
Hofer N., Kolaj O., Li H., Cherezov
V., Gillilan R., Wall J. G., Caffrey M.
Crystallization and preliminary X-ray diffraction analysis of a
soluble domain of the putative zinc transporter CzrB from Thermus
thermophilus. Acta Cryst. F, Struct. Biol. Cryst. Commun., 63(8),
673 -7, 2007 |
| |
 |
Dias S. M. G, Cerione R. A. X-ray Crystal Structures Reveal Two
Activated States for RhoC. Biochemistry, 46(22),
6547-6558, 2007
|
| |
 |
Srivastava D. K., Jude K. M., Banerjee A. L., Haldar M.,
Manokaran S., Kooren J., Mallik S., Christianson D. W.
Structural analysis of charge discrimination in the binding of
inhibitors to human carbonic anhydrases I and II. J. Am.
Chem. Soc., 129(17), 5528-37, 2007
|
|
 |
Di Costanzo L., Gomez G. A., Christianson D. W. Crystal
Structure of Lactaldehyde Dehydrogenase from Escherichia coli
and Inferences Regarding Substrate and Cofactor Specificity.
JMB, 366(2), 481-493, 2007
|
|
 |
Olia A.
S., Casjens S., Cingolani G. Structure of phage P22 cell
envelopeA-penetrating needle. Nature Structural & Molecular
Biology, 14, 1221-1226, 2007
|
| |
 |
Yang Y.,
Gourinath S., Kovacs M., Nyitray L., Reutzel R., Himmel D. M.,
O`Neall-Hennessey E., Reshetnikova L., Szent-Gyorgyi A. G.,
Brown J. H., Cohen C. Rigor-like Structures from Muscle
Myosins Reveal Key Mechanical Elements in the Transduction
Pathways of This Allosteric Motor. Structure, 15(5),
553-564, 2007
|
| |
 |
Brian D. Zoltowski, Sarsten Schwerdtfeger, Joanne Widom,
Jennifer J. Loros, Alexandrine M. Bilwes, Jay C. Dunlap, Brian R.
Crane. Conformational Switching in the Fungal Light Sensor Vivid.
Science, 316, 5827, 1054-1057, 2007 |
| |
 |
Sung Haeng Lee, David B. Hayes, Grzegorz Rebowski, Isabelle Tardieux,
Roberto Dominguez. Toxofilin from
Toxoplasma gondii forms a ternary complex with an
antiparallel actin dimer. PNAS, v 104, 41, 16122-16127, 2007
|
| |
 |
Lee S.
H., Weins A., Hayes D. B., Pollak M. R., Dominguez R.
Crystal Structure of the Actin-Binding Domain of alpha-Actinin-4
Lys255Glu Mutant Implicated in Focal Segmental
Glomerulosclerosis. JMB, Epub, 2007
|
| |
 |
Zhang Y., El Kouni M. H.,
Ealick S. E. Substrate analogs induce an intermediate
conformational change in Toxoplasmagondii adenosine kinase.
Acta Cryst., D, 63(2), 126-34, 2007 |
| |
 |
Hoskins A. A., Morar M., Kappock T. J., Mathews I. I., Zaugg J. B.,
Barder T. E., Peng P., Okamoto A., Ealick S. E., Stubbe J.
N5-CAIR mutase: role of a CO2 binding site and substrate movement in catalysis.
Biochemistry, 46(10), 2842-55, 2007 |
| |
 |
Hidber E., Brownie E. R., Hayakawa
K., Fraser M. E.; Participation of Cys123alpha of
Escherichia coli succinyl-CoA synthetase in catalysis. Acta.
Cryst. D, Biol. Cryst., 63(8), 876-84, 2007 |
|
 |
Kozlov
G., Peschard P., Zimmerman B., Lin T., Moldoveanu T.,
Mansur-Azzam N., Gehring K., Park M. Structural basis for
UBA-mediated dimerization of c-Cbl ubiquitin ligase. JBC,
282(37), 27547-27555, 2007
|
| |
 |
Kumar
S., Padhan N., Alam N., Gourinath S. Crystal structure of
calcium binding protein-1 from Entamoeba histolytica: A novel
arrangement of EF hand motifs. Proteins: Structure, Function
and Bioinformatics, 68(4), 990-998, 2007
|
|
 |
Kim
C-U., Hao Q. and Gruner S. M. High-pressure cryocooling
for capillary sample cryoprotection and diffraction phasing at
long wavelengths. Acta Cryst Sect. D Bio Cryst., 63(5),
653-659, 2007
|
|
 |
Collins
M. D., Quillin M. L., Hummer G., Matthews B. W., Gruner S. M.
Structural Rigidity of a Large Cavity-containing Protein
Revealed by High-pressure Crystallography. JMB, 367(3), 752-763, 2007
|
|
 |
Drake E.
J., Cao J., Qu J., Shah M. B., Straubinger R. M. and Gulick
A. M. The 1.8 Å Crystal Structure of PA2412, an MbtH-like
Protein from the Pyoverdine Cluster of Pseudomonas aeruginosa.
JBC, 282(28), 20425-20434, 2007
|
|
 |
Reger A.
R., Carney J. M., Gulick A. M. Biochemical and
crystallographic analysis of substrate binding and
conformational changes in acetyl-CoA synthetase.
Biochemistry, 46, 6536-6546, 2007
|
|
 |
Fan Jun, Qun Liu, Quan Hao,
Maikun Teng, Liwen Niu. Crystal Structure of Uroporphyrinogen
Decarboxylase from Bacillus subtilis. J. Bacteriol, 189,
3575-3580, 2007
|
|
 |
Xing W.,
Zou Y., Liu Q., Liu J., Luo X., Huang Q., Chen S., Zhu L., Bi
R., Hao Q., Wu J-W., Zhou J-M., Chai J. The structural
basis for activation of plant immunity by bacterial effector
protein AvrPto. Nature, 449, 243-247, 2007
|
| |
 |
Qun Liu, Irina A. Kriksunov, Christelle Moreau, Richard Graeff,
Barry V. L. Potter, Hon Cheung Lee, and Quan Hao.
Catalysis associated conformational changes revealed by human CD38 complexed with a
non-hydrolyzable substrate analog. JBC,
282(34), 24825-32, 2007 |
| |
 |
Qun Liu, Irina A. Kriksunov, Richard Graeff, Hon Cheung Lee, and Quan Hao.
Structural Basis for Formation and Hydrolysis of the Calcium Messenger Cyclic ADP-ribose by
Human CD38. JBC, 282, 5853-5861, 2007 |
| |
 |
H. Rong, Y. Li, X. Shi, X. Zhang, Y. Gao, H. Dai, M. Teng, L. Niu, Q. Liu and Q. Hao.
Structure of human upstream binding factor HMG box 5 and site
for binding of the cell-cycle regulatory factor TAF1. Acta
Cryst.,D63, 730-737, 2007 |
| |
 |
H. Wang, Y. Yan, Q. Liu, Y. Huang, Y. Shen, L. Chen, Y. Chen, Q. Y. Yang, Q. Hao, K.
W. Wang and J. J. Chai. Structural basis for modulation of Kv4
K+ channels by auxiliary KChIP subunits. Nature Neuroscience, 10,
32-39, 2007 |
| |
 |
Lockless
S. W., Zhou M. and MacKinnon R. Structural and
Thermodynamic Properties of Selective Ion Binding in a K+
Channel. PLoS Biology, 5(5), e121, 2007
|
|
 |
Li K., Ossareh-Nazari B., Liu X., Dargemont C., Marmorstein R.
Molecular Basis for Bre5 Cofactor Recognition by the Ubp3
Deubiquitylating Enzyme. JMB, 372, 194-204, 2007
|
|
 |
Sanders
B. D., Zhao K., Slama J. T., Marmorstein R. Structural
basis for nicotinamide inhibition and base exchange in Sir2
enzymes. Mol Cell, 25(3), 463-72, 2007
|
|
 |
Divya N., Grifith E. and Narayana N. Structure of the
Q67H mutant of R67 dihydrofolate reductase-NADP+ complex reveals
a novel cofactor binding mode. Protein Science, 16,
1063-1068, 2007
|
|
 |
Nikolov D., Li C., Lackmann M., Jeffrey P., Himanen J.
Crystal structure of the human ephrin-A5 ectodomain. Protein
Science, 16, 996-1000, 2007
|
|
 |
Gillilan
R. E., Ayers S. D., Noy N. Structural Basis for
Activation of Fatty Acid-binding Protein 4. JMB, 372(5),
1246-60, 2007
|
|
 |
Ayers S.
D., Nedrow K. L., Gillilan R. E. and Noy N. Continuous
Nucleocytoplasmic Shuttling Underlies Transcriptional Activation
of PPAR by FABP4. Biochemistry, 46(23), 6744-6752, 2007
|
|
 |
Srimathi
T., Robbins S. L., Dubas R. L., Seo J-H., Park Y. C.
Purification, crystallization and preliminary crystallographic
characterization of the caspase-recruitment domain of human
Nod1. Acta Cryst., Section F, Structural Biology and
Crystallization Communication, 63(1), 21-23, 2007
|
|
 |
Englebienne P., Fiaux H., Kuntz D. A., Corbeil C. R., Gerber-Lemaire
S, Rose D. R., Moitessier N.
Evaluation of docking programs for predicting binding of Golgi -mannosidase
II inhibitors: A comparison with crystallography. Proteins: Structure, Function, and Bioinformatics, 69(1), 160-176,
2007
|
|
 |
Smilgies
D-M., Blasini D. R.
Indexation scheme for oriented molecular thin films studied with
grazing-incidence reciprocal-space mapping.
J. Appl. Cryst. 40, 716-718, 2007
|
|
 |
Lomakin I.,B., Xiong Y. and
Steitz T. A.
The crystal structure of yeast fatty acid synthase, a cellular
machine with eight active sites working together. Cell, 129, 319-332,
2007
|
|
 |
Field
M. S., Szebenyi D. M. E., Perry C. A., Stover P. J.
Inhibition of 5,10-methenyltetrahydrofolate synthetase. Biochemistry and Biophysics, 458(2), 194-201,
2007
|
|
 |
Moza B.,
Varma A. K., Buonpane R. A., Zhu P., Herfst C. A., Nicholson M. J., Wilbuer
A-K., Seth N. P., Wucherpfennig K. W., McCormick J. K., Kranz D. M.,
Sundberg
E. J.
Structural basis of T-cell specificity and activation by the
bacterial superantigen TSST-1. EMBO Journal, 26, 1187-1197,
2007
|
|
 |
Brouillard J-N. P., Gunther S., Varma A. K., Gryski I., Herfst C. A.,
Nur_ur Rahman A. K. M., Leung D. Y. M., Schlievert P. M., Madrenas J.,
Sundberg E. J., McCormick J. K.
Crystal Structure of the Streptococcal Superantigen SpeI and
Functional Role of a Novel Loop Domain in T Cell Activation by
Group V Superantigens. JMB, 367(4), 925-934,
2007
|
|
 |
Lee S.,
Tsai F. T. F.
Crystallization and preliminary X-ray crystallographic analysis
of a 40 kDa N-terminal fragment of the yeast prion-remodeling
factor Hsp104. Acta Cryst., F63, 784-786, 2007
|
|
 |
MacElrevey C., Spitale R. C., Krucinska J., Wedekind J. E.
A posteriori design of crystal contacts to improve the X-ray
diffraction properties of a small RNA enzyme. Acta Cryst. D Biol Cryst., 63(7), 812-25,
2007
|
| |
 |
Abhijit A. Gurjar, Neela H. Yennawar, Hemant P. Yennawar,
Kanagalaghatta R. Rajashankar, Narasimha V. Hegde and Bhushan M.
Jayarao. Expression, crystallization and preliminary X-ray
diffraction studies of recombinant Clostridium perfringens β2-toxin.
Acta Crystallographica, Section F, Volume 63, Issue 6,
484-487, 2007 |
| |
 |
Zhou M., Azzi A., Xia X., Wang E-D., Lin S-X.
Crystallization and preliminary X-ray diffraction of E.coli
arginyl-tRNA synthetase in complex form with a tRNAarg. Amino Acids, 32(4), 479-482,
2007
|
| |
 |
|
| |
top |
|
|
| |
 |
Govindasamy Lakshmanan, Eric Padron, Robert McKenna, Nicholas
Muzyczka, Nikola Kaludov, John A. Chiorini, and Mavis
Agbandje-McKenna. Structurally Mapping the Diverse Phenotype
of Adeno-Associated Virus Serotype 4. J. Virology, 80(23),
11556-11570, 2006 |
| |
 |
Lakshmanan Govindasamy, Eric Padron, Robert McKenna,
Nicholas Muzyczka, Nikola Kaludov, John A. Chiorini, and
Mavis Agbandje-McKenna.
Structurally Mapping the Diverse Phenotype of Adeno-Associated
Virus Serotype 4. J. Virol., 80, 11556-11570,
2006
|
| |
 |
A. Lopez-Bueno , M. P. Rubio, N.
Bryant, R. McKenna, M. Agbandje-McKenna, J. M. Almendral. Host
selection of subtle topological changes at the sialic acid
binding pocket of the parvovirus capsid modulating cell binding
affinity drastically determine virulence. J. Virol., 80,
1563-1573, 2006. |
| |
 |
Tian Y., Ma X., Oren D. A.,
Hering K., Wrin T., Petropoulos C.J., Arnold E., Arnold G. F.
and Taylor J. W. Structure-based Design of conformationally
constrained peptide immunogens with high affinities for the
HIV-1 neutralizing monoclonal antibody 2F5. Manuscript in
preparation, 2006. |
| |
 |
Das K., A. D. Clark Jr., P. J.
Lewi, S. H. Hughes and E. Arnold.
Detection of non-nucleoside inhibitor binding to HIV-1 reverse
transcriptase by dynamic light scattering. Submitted,
2006. |
| |
 |
Gouskos T., K. Das, S. Lewin, F. Wightman, E. Arnold,
T. Bock and J. Torresi. Functional analysis
of the beta3-beta4 region in the fingers subdomain of the HBV
polymerase. Submitted, 2006. |
| |
 |
Kenji Maeda, Debananda Das, Hiromi Ogata-Aoki, Hirotomo Nakata, Toshikazu Miyakawa, Yasushi
Tojo, Rachael Norman, Yoshikazu Takaoka, Jianping Ding, Gail F.
Arnold Eddy , and Hiroaki Mitsuya.
Structural and Molecular Interactions of CCR5 Inhibitors with CCR5. J. Biol.
Chem., 281, 12688 - 12698, 2006 |
| |
 |
Monica E. Hamburgh, Kenneth A. Curr, Melissa Monaghan, Vasudev R. Rao, Snehlata Tripathi,
Bradley D. Preston, Stefan Sarafianos, Eddy Arnold , Thomas Darden, and Vinayaka R. Prasad.
Determinants of Slippage-mediated Mutations by Human Immunodeficiency Virus Type
1 Reverse Transcriptase. JBC, 281, 7421 - 7428, 2006 |
| |
 |
McWilliams M. J., J. G. Julias,S. G. Sarafianos, W. G. Alvord, E. Arnold and S. H. Hughes.
Combining mutations in human immunodeficiency virus type 1
(HIV-1) reverse transcriptse with mutations in the HIV-1
polypurine tract (PPT) affects RNase H cleavages involved in PPT
utilization. Virology, in press, 2006 |
| |
 |
Boyer P. L, S. G. Sarafianos, P.
K .Clark, E. Arnold and S. H. Hughes. Why do HIV-1 and HIV-2 use
different pathways to develop AZT resistance?. PLoS
Pathogens,in press, 2006. |
| |
 |
Jeremy Wally, Peter J. Halbrooks, Clemens Vonrhein, Mark A. Rould, Stephen J. Everse, Anne B.
Mason, and Susan K. Buchanan.
The crystal structure of iron-free human serum transferrin
provides insight into inter-lobe communication and receptor
binding. JBC, 2006 |
|
 |
Albright R. A., Vazquez Ibar J.-L., Kim C. U., Gruner S. M., and Morais
Cabral J. H. The RCK domain of the KtrAB K+ transporter:
multiple conformations of an octameric ring. Cell, 126,
1147-1159, 2006 |
| |
 |
Cherezov V., Clogston J., Papiz M. Z.,
Caffrey M. Room to move: crystallizing membrane proteins in
swollen lipidic mesophases. JMB, 357(5),
1605-1618, 2006. |
| |
 |
Wakshlag J. J., Antonyak M. A., Boehm J., Duff K., Cerione R. A.
Effects of tissue transglutaminase on beta-amyloid 1-49-induced
apoptosis. The Protein Journal,In Press, 2006 |
| |
 |
Fidyk N., Wang J. B., Cerione R. A. Influencing cellular
transformation by modulating the rates of GTP hydrolysis by
Cdc42. Biochemistry, Submitted, 2006 |
| |
 |
Lin Q., Yang W., Cerione R. A.
Measurement of epidermal growth factor receptor turnover and
effects of Cdc42. Methods Enzymol, 406, 614-625, 2006 |
| |
 |
Majumdar
S., Ramachandran S., Cerione R. A. New Insights into the Role of
Conserved, Essential Residues in the GTP Binding/GTP Hydrolytic
Cycle of Large G Proteins. JBC, 281(14),
9219-9226, 2006. |
| |
 |
Baird D., Feng Q.,
Cerione R. A.
Biochemical characterization of Cool (Cloned-out-of-Library)/PIX
(Pak-interactive exchange factor) proteins. Methods Enzymol,
406, 58-69, 2006.
|
| |
 |
Jude K.
M., Banerjee A. L.,
Haldar M. K., Manokaran S., Roy B., Mallik S., Srivastava D. K.,
Chrisianson D. W. Ultrahigh resolution crystal structures of
human carbonic anhydrases I and II complexed with `two-prong`
inhibitors reveal the molecular basis of high affinity. J.
Am. Chem. Soc., 128(9), 3011-3018, 2006.
|
| |
 |
Kevin Jude, Abir Banerjee, Manas
Haldar, Sumathra Manokaran, Bidhan Roy, Sanku Mallik, D. K.
Srivastava, David Christianson. Ultrahigh Resolution Crystal
Structures of aHuman Carbonic Anhydrases I and II Complexed with
`Two-Prong` Inhibitors Reveal the Molecular Basis of High
Affinity. J. Am. Chem. Soc., 128, 3011-3018, 2006.
|
| |
 |
Gennadios H. A., Whittington D. A., Li
X., Fierke C. A. and Christianson D. W. Mechanistic
Inferences from the Binding of Ligands to LpxC, a
Metal-Dependent Deacetylase. Biochemistry, 45, 7940-7948,
2006.
|
|
 |
Taylor D.
J., Speir J. A., Reddy V., Cingolani G., Pringle F. M.,
Ball L. A. Johnson J. E. Preliminary x-ray characterization of
authentic providence virus and attempts to express its coat
protein gene in recombinant baculovirus. Arch. Virol., 151,
1, 155-65, 2006
|
| |
 |
G. Cingolani,D. Andrews and S. Casjens. Crystallogenesis of bacteriophage P22
tail accessory factor gp26 at acidic and neutral pH. Acta
Cryst., F62, 6, 477-482,
2006.
|
| |
 |
D. E. Hurt, J.
Widom and J. Clardy. Structure of Plasmodium
falciparum dihydroorotate dehydrogenase with a bound
inhibitor. Acta Cryst., D62, 3, 312-323, 2006.
|
| |
 |
Hurt D.
E., Sutton A. E. and Clardy J. . Brequinar derivatives and
species-specific drug design for dihydroorotate dehydrogenase.
Bioorganic & Medicinal Chemistry Letters, 16, 1610-1615,
2006.
|
| |
 |
Nonato M. C., Widom J., and Clardy J.
Human methionine aminopeptidase type 2 in complex with l- and d-methionine.
Bioorganic & Medicinal Chemistry Letters, 16, 2580-2583, 2006.
|
|
 |
Cody,
V., Pac, J., Chisum, K. New Insights into Dihydrofolate
Reductase (DHFR) Interactions: Analysis of Pneumocystis carinii
and Mouse DHFR Complexes with NADPH and Two Highly Potent
5-(w-Carboxy(alkyloxy) Trimethoprim Derivatives Reveals
Conformational Correlations with Activity and Novel Parallel
Ring Stacking Interactions. Proteins Structure, Function
and Bioinformatics, In Press, 2006
|
|
 |
Houdusse
A, Gaucher J.F., Krementsova E., Mui S., Trybus K. M., Cohen C.
Crystal structure of apo-calmodulin bound to the first two IQ
motifs of myosin V reveals essential recognition features.
PNAS,03(51), 19326-31, 2006
|
| |
 |
Chao X, Muff T. J., Park S. Y.,
Zhang S., Pollard A. M., Ordal G. W., Bilwes A. M., Crane B. R.
A receptor-modifying deamidase in copmlex with a signaling
phosphatase reveals reciprocal regulation. Cell, 124(3),
561-571, 2006.
|
| |
 |
Pant K.,
Crane B. R. Nitrosyl-heme structures of Bacillus subtilis nitric oxide
synthase have implications for understanding substrate
oxidation. Biochemistry, 45(8), 2537-44, 2006.
|
| |
 |
Kang S. A., Hoke K. R.,
Crane B.
R. Solvent isotope effects on interfactial protein electron
transfer in crystals and electrode films. J. Am. Chem. Soc., 128(7),
2346-55, 2006
|
| |
 |
Blanco-Rodriguez A. M., Busby M., Gradinaru
C., Crane B. R., DiBilio A. J., Matousek P., Towrie M., Leigh B.
S., Richards J. H., Vlcek A., and Gray H. B.
Excited-State Dynamics of Structurally Characterized [ReI(CO)3(phen)(HisX)]+
(X = 83, 109) Pseudomonas aeruginosa Azurins in Aqueous
Solution J. Am. Chem. Soc., 128, 4365-4370,2006.
|
| |
 |
Shen N., Guo
L., Yang B., Jin Y., and Ding J. Structure of human
tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the
molecular basis of tRNA recognition and specificity.
Nucleic Acids
Res., 34, 3246-3258,2006 |
|
 |
Zhang
P., J. Du, B. Sun, X. Dong, G. Xu, J .Zhou, Q. Q. Huang, Q. Liu,
Q. Hao and J. P. Ding. Structure of human MRG15 chromo domain
and its binding to Lys36-methylated histone H3. Nucleic Acids
Research, 34, 6621-6628, 2006
|
|
 |
Jurgenson C.T., Chatterjee A., Begley T. P. and Ealick S. E.
Structural insights into the function of the thiamin
biosynthetic enzyme Thi4 from Saccharomyces cerevisiae. Biochemistry, 45(37),
11061-70, 2006
|
|
 |
Xu
Guoqiang. Narayan Mahesh, Kurinov Igor, Ripoll Daniel R., Welker
Ervin, Khalili Mey, Ealick Steven E., Scheraga Harold A.
A localized specific interaction alters the unfolding pathways
ofstructural homologues.
J. Am. Chem. Soc., 128, 1204-13, 2006
|
|
 |
Zhang
Y., Secrist J. A. 3rd, Ealick S. E. The
structure of human deoxycytidine kinase in complex with
clofarabine reveals key interactions for prodrug activation.
Acta Cryst., D, 62(2), 133-9, 2006
|
| |
 |
Zhang Y., Porcelli M.,
Cacciapuoti G., Ealick S. E. The crystal structure of
5`-Deoxy-5`-methylthioadenosine Phosphorylase II from sulfolobus
solfataricus, a thermophilic enzyme stabilized by intramolecular
disulfide bonds. JMB, 357, 252-262, 2006. |
| |
 |
Lehmann C., Begley T.,
Ealick S.
E. Structure of the escherichia coli ThiS-ThiF complex, a key
component of the sulfur transfer system in thiamin biosynthesis.
Biochemistry, 45, 11-19, 2006. |
|
 |
Nezami
Azin G., Poy Florence, Eck Michael J. Structure of the
autoinhibitory switch in formin mDia1. Structure, 14(2),
257-63, 2006
|
| |
 |
Ceccarelli Derek F., Song Hyun Kyu, Poy Florence, Schaller
Michael D., Eck Michael J. Crystal structure of the FERM
domain of focal adhesion kinase. JBC, 281,
252-9, 2006
|
| |
 |
Meyer P.
A., Ye P., Zhang M., Suh M.-H., and Fu J. Phasing RNA
Polymerase II Using Intrinsically Bound Zn Atoms: An Updated
Structural Model. Structure, 14, 973-982, 2006. |
|
 |
Alexey
Yu. Denisov, Gang Chen, Tara Sprules, Tudor Moldoveanu, Pierre
Beauparlant, and Kalle Gehring. Structural Model of the
BCL-w-BID Peptide Complex and Its Interactions with Phospholipid
Micelles. Biochemistry, 45(7), 2250-2256, 2006
|
|
 |
Ghosh
D., Erman M. and Griswold J. Crystal Structure of Estrone
Sulfatse-Estrone Complex and Mechanism of Estrogen Recognition.
In Preparation, 2006
|
|
 |
Qun Shen,
Quan Hao and Sol M Gruner. Macromolecular Phasing.
Physics Today. Japanese version: Parity, Vol. 21, No. 10, 46-52, 2006
|
| |
 |
Chae Un Kim,
Quan Hao and
Sol M. Gruner. Solution of
protein crystallographic structures by high-pressure cryocooling
and noble-gas phasing.
Acta Cryst. D, 62(7), 687-694, 2006 |
| |
 |
Sundlov J. A., Garringer J. A.,
Carney J. M., Reger A. S., Drake E. J., Duax W. L. and Gulick A.
M. Determination of the crystal structure of EntA, a
2,3-dihydro-2,3-dihydroxybenzoic acid dehydrogenase from
Escherichia coli.
Acta Cryst., D 62, 7, 734-740, 2006. |
| |
 |
Jun Fan,
Qun Liu, Quan Hao, Maikun Teng, Liwen Niu. Crystal
Structure of Uroporphyrinogen Decarboxylase from Bacillus
subtilis. J. Bacteriol., Accepted, 2006
|
| |
 |
Li X., Guo M., Fan J., Tang W.,
Wang D., Ge H., Rong H., Teng M., Niu L., Liu Q., Hao Q. Crystal
structure of 3-hydroxyanthranilic acid 3,4-dioxygenase from Saccharomyces cerevisiae: A special subgroup of the type III
extradiol dioxygenases. Protein Sci.,15,761-773,2006. |
| |
 |
Q. Hao. Macromolecular envelope
determination and envelope-based phasing.
Acta Cryst., D 62, 8, 909-914, 2006. |
| |
 |
Chad R. Simmons, Qun Liu,
Qingqiu Huang, Quan Hao, Tadhg P. Begley, P. Andrew Karplus, and
Martha H. Stipanuk. Crystal
Structure of Mammalian Cysteine Dioxygenase: a Novel Mononuclear
Iron Center for Cysteine Thiol Oxidation. JBC, 281, 18723 - 18733, 2006. |
| |
 |
Richard Graeff, Qun Liu, Irina
A. Kriksunov, Quan Hao, and Hon Cheung Lee. Acidic residues at the active
sites of CD38 and ADP-ribosyl cyclase determine NAADP synthesis
and hydrolysis activities. JBC, 281,
28951-28957, 2006. |
| |
 |
Qun
Liu, Irina A. Kriksunov, Richard Graeff, Cyrus Munshi, Hon
Cheung Lee, and Quan
Hao. Structural basis for the mechanistic
understanding human CD38
controlled multiple catalysis.
JBC, 281, 32861-32869, 2006. |
|
 |
Adams
Melanie A., Jia Zongchao. Modulator of Drug Activity B
from Escherichia coli: Crystal Structure of a Prokaryotic
Homologue of DT-diaphorase. JMB, 359(2),
455-65,
2006
|
| |
 |
Adams J. J., Pal G.,
Jia Z.,
Smith S. P. Mechanism of bacterial cell-surface attachment
revealed by the structure of cellulosomal type II
cohesin-dockerin complex. PNAS, 103(2), 305-310, 2006. |
| |
 |
Huang, J., and Lipscomb, W. N. T-State
Active Site of Aspartate Transcarbamylase: Crystal Structure of
the Carbamyl Phosphate and Alanosine Ligated Enzyme.
Biochemistry, 45, 346-352, 2006.
|
|
 |
L. Vogeley and
H. Luecke. Crystallization, X-ray diffraction analysis and SIRAS/molecular-replacenent
phasing of three crystal forms of Anabaena sensory rhodopsin transducer. Acta Cryst.,
F62, 4, 388-391, 2006
|
|
 |
Ho WC,
Fitzgerald MX, Marmorstein R. Structure of the p53 core domain
dimer bound to DNA. J. Biol. Chem., 281(29), 20494-502, 2006
|
|
 |
Fitzgerald Mary X., Rojas Jeannie R., Kim John M., Kohlhaw
Gunter B., Marmorstein Ronen. Structure of a Leu3-DNA
Complex: Recognition of Everted CGG Half-Sites by a Zn(2)Cys(6)
Binuclear Cluster Protein. Structure, 14(4), 725-35, 2006
|
| |
 |
Fisher
S. Zoë, Govindasamy Lakshmanan, Tu Chingkuang C., Agbandje-McKenna
Mavis, Silverman David N., Rajaniemi Hannu J., McKenna Robert. Structure of human salivary alpha-amylase
crystallized in a C-centered monoclinic space group. Acta
Cryst F, 62, 2, 88-93, 2006
|
| |
 |
Budayova-Spano Monika, Fisher S. Zoe, DAuvergne Marie
Therese, Agbandje-McKenna Mavis, Silverman David N.,
Myles Dean A. A., McKenna Robert. Production and X-ray
crystallographic analysis of fully deuterated human carbonic
anhydrase II. Acta Cryst F, 62, 1, 6-9, 2006
|
| |
 |
Fisher,
S. Z., Govindasamy, L., Boyle, N., Agbandje-McKenna, M.,
Silverman, D. N., Blackburn, G. M., and McKenna, R. X-ray
crystallographic studies reveal that the incorporation of spacer
groups in carbonic anhydrase inhibitors causes alternate binding
modes.
Acta Cryst F, 62, 618-622, 2006.
|
|
 |
Narayana Narendra , Shamala N, Ganesh Krishna N.,
Viswamitra M. A.
Interaction between the Z-type DNA duplex and
1,3-propanediamine: crystal structure of d(CACGTG)2 at 1.2 A
resolution. Biochemistry, 45, 4, 1200-11, 2006
|
| |
 |
Kwok L.
W., Shcherbakova I., Lamb J. S., Park H. Y., Andresen K., Smith
H., Brenowitz M., and Pollack L. Concordant Exploration
of the Kinetics of RNA Folding from Global and Local
Perspectives. JMB, 355, 282-293, 2006. |
| |
 |
X. Qiu, L. W. Kwok, H. Y. Park,
J. S. Lamp, K. Andresen and L. Pollack. Measuring inter-DNA
Potentials in Solution. Physical Review Letters, 96,
138101-1 - 138101-4, 2006. |
| |
 |
Chen R., Neill J. D., Estes M. K., and Prasad
B. V. V. X-ray structure of a native calicivirus:
Structural insights into antigenic diversity and host
specificity. PNAS, 103, 8048-8053, 2006. |
| |
 |
Monnier N., Higo-Moriguchi K., Sun Z.-Y. J., Prasad B. V. V.,
Taniguchi K., and Dormitzer P. R. High-Resolution
Molecular and Antigen Structure of the VP8* Core of a Sialic
Acid-Independent Human Rotavirus Strain. J. Virol, 80,
1513-1523, 2006. |
|
 |
Victoria E. Ahn, Paul Leyko, Jean-René Alattia,
Lu Chen and Gilbert G. Privé. Crystal structures of
saposins A and C. Protein Science,15, 1849-1857, 2006
|
| |
 |
Roni D. Gordon, Prashanth
Sivarajah, Malathy Satkunarajah, Dengbo Ma, Chris A. Tarling,
Dragos Vizitiu, Stephen G. Withers and James M. Rini. X-ray
Crystal Structures of Rabbit N-acetylglucosaminyltransferase
I (GnT I) in Complex with Donor Substrate Analogues. JMB, V. 360, 1,67-79,2006. |
|
 |
Pak J.
E., Arnoux P., Zhou S., Sivarajah P., Satkunarajah M., Xing X.,
and Rini J. M. X-ray crystal structure of leukocyte type
core 2a1,6-N-acetylglucosaminyltransferase: evidence for a
convergence of metal ion independent glycosyltransferase
mechanism. JBC, 281, 36, 26693-701, 2006.
|
| |
 |
Kawatkar S. P., Kuntz D. A., Woods R. J., Rose D. R. and Boons
G. J. Structural Basis of the Inhibition of Golgi
Mannosidase II by Mannostatin A and the Role of the Thiomethyl
Moiety in Ligand-Protein Interactions. J. Am. Chem. Soc.,
128, 8310-8319, 2006. |
|
 |
Kuntz D.A., Liu H., Bols M. and Rose D. R.
The role of the active site Zn in the catalytic mechanism of the
GH38 Golgi a-mannosidase II: implications from noeuromycin
inhibition. Biocatalysis and Biotransformation, 24,
55-61, 2006
|
| |
 |
Lauren R. Sheckler, Lisa Henry,
Shuzo Sugita, Thomas C. Südhof, and Gabby Rudenko.
Crystal structure of the second
LNS/LG domain from neurexin 1 :
Ca2+-binding and the effects of alternative splicing.
JBC, 2006. |
| |
 |
Lu, J. Z.,
Fujiwara, T., Komatsuzawa, H., Sugai, M., and Sakon, J.
Cell Wall-targeting Domain of Glycylglycine Endopeptidase
Distinguishes among Peptidoglycan Cross-bridges.
JBC, 281, 549-558,2006. |
|
 |
Dashuang Shi, Xiaolin Yu, Lauren
Roth, Hiroki Morizono, Mendel Tuchman, Norma M. Allewell.
Structures of N-acetylornithine transcarbamoylase from
Xanthomonas campestris complexed with substrates and substrate
analogs imply mechanisms for substrate binding and catalysis.
Proteins: Structure, Function, and Bioinformatics, 64, 2,
532-542, 2006
|
|
 |
Shi D., Yu X., Roth L., Morizono H.,
Tuchman M. and Allewell N. M.
Structures of N-acetylornithine transcarbamoylase from
Xanthomonas campestris complexed with substrates and substrate
analogues imply mechanisms for substrate binding and catalysis.
Proteins, 634, 532-542, 2006
|
| |
 |
Nieng Yan, Jun R. Huh, Virgil
Schirf, Borries Demeler, Bruce A. Hay, and Yigong Shi.
Structure and Activation Mechanism of the Drosophila Initiator Caspase Dronc.
JBC, 281, 8667 - 8674, 2006. |
| |
 |
Field, M. S., Szebenyi, D. M. E., and Stover,
P. J. Regulation of de Novo Purine Biosynthesis by
Methenyltetrahydrofolate Synthetase in Neuroblastoma.
JBC, 281, 4215-4221, 2006. |
|
 |
Banerjee A., Santos W. L.,
Verdine G. L. Structure of a DNA glycosylase searching for
lesions. Science, 311, 1153-1157, 2006. |
|
 |
Blainey
Paul C., van Oijen Antoine M., Banerjee Anirban , Verdine
Gregory L., Xie X .,Sunney X. S. A base-excision DNA-repair
protein finds intrahelical lesion bases by fast sliding in
contact with DNA. PNAS USA, 103, 15, 5752-7,
2006
|
|
 |
Qiaozhen Ye, Robert M. Krug and Yizhi Jane Tao. The
mechanism by which influenza A virus nucleoprotein forms
oligomers and binds RNA. Nature,
2006
|
|
 |
Joseph E. Wedekind, Richard Gillilan, Alena Janda, Jolanta Krucinska, Jason D. Salter,
Ryan P. Bennett, Jay Raina, and Harold C. Smith. Nanostructures of
APOBEC3G support a hierarchical assembly model of high molecular
mass ribonucleoprotein particles from dimeric subunits. JBC, 281, 50, 38122-38126, 2006.
|
| |
 |
Salter J., Krucinska J., Alam S.,
Grum-Tokars V. and Wedekind J. E. Water in the active site of an
all-RNA hairpin ribozyme and the effects of Gua8 base variants
on the geometry of phosphoryl transfer. Biochemistry,
45 (3), 686-700, 2006.
|
|
 |
Yingfang Liu , Adhar C. Manna,
Cheol-Ho Pan, Irina A. Kriksunov, Daniel J. Thiel, Ambrose L.
Cheung and Gongyi Zhang. Structural and function analyses of the
global regulatory protein SarA from Staphylococcus aureus.
PNAS, 103(7), 2392-2397, 2006
|
|
 |
Cui Y.,
Parra I., Zhang M., Hilsenbeck S. G., Tsimelzon A., Furukawa T.,
Horii A., Zhang Z-Y., Nicholson R. I. and Fuqua S. A.
Elevated Expression of Mitogen-Activated Protein Kinase
Phosphatase 3 in Breast Tumors: A Mechanism of Tamoxifen
Resistance. Cancer Research, 66, 5950-5959, 2006
|
|
 |
Zue C.,
Liang F., Mahmood R., Vuolo, M. Wyckoff J., Qian H., Tsai K-L.,
Kim M., Locker J., Zhang Z-Y. and Segall J. E.
ErbB3-dependent motility and intravasation in breast cancer
metastasis. Cancer Research,66, 1418-1426, 2006
|
|
 |
Liu S.,
Sun J-P., Zhou B. and Zhang Z-Y. Structural basis of
docking interaction between ERK2 and MAP kinase phosphatase 3.
PNAS USA, 103, 5326-5331, 2006
|
|
 |
Lee H.,
Xie L., Luo Y., Lee S-Y, Lawrence D. S., Wang X. B., Sotgia F,
Lisanti, M. P. and Zhang, Z-Y. Identification of
Phospho-Caveolin-1 as a Novel PTP1B Substrate. Biochemistry,
45, 234-240, 2006
|
|
 |
Xue C.,
Wyckoff J., Liang F., Sidani M., Violini S., Tsai K-L., Zhang
Z-Y, Sahai E., Condeelis J., and Segall J. E. Epidermal
Growth Factor Receptor Overexpression Results in Increased Tumor
Cell Motility In vivo Coordinately with Enhanced Intravasation
and Metastasis. Cancer Research, 66, 192-197, 2006
|
|
 |
Kumar S.,
Zhou B., Liang F., Yang H., Wang W-Q. and Zhang Z-Y.
Global Analysis of Protein Tyrosine Phosphatase Activity with
Ultra-Sensitive Fluorescent Probes. J. Proteome Res., 5,
1898-1905, 2006
|
| |
top |
updated
by Weilin Meng |
| |
 |
M. D. Lane, H.-J.
| |