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HKL2000 and HKL (xdisp/denzo/scalepack) |
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Graphical interface to Denzo, XdisplayF, Scalepack, and
associated routines. |
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type "hkl2000"
to start data processing |
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DPS processing programs |
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Supported Detectors |
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Download DPS |
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Program Details |
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Software History |
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Frequently Asked Questions |
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References |
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Interactive DPS/Mosflm/CCP4 Data
Processing Suite |
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User interface to be used to process images from variety of area detectors |
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type "process" to process a set of data for an initial run |
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XDS
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Documentation and an initial input file are available via
xds_doc. To run XDS create a new directory, change to it, place the XDS.INP
there and edit it according to your project |
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type
"xds_doc" for help and input file |
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CCP4 suite documentation |
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For
interface to CCP4 programs & file display type
CCP4i |
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type
"CCP4i" |
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SAPI
(CCP4) |
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Find
heavy atom positions using SAD data: |
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create an MTZ file of
SAD data |
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create a sapi.com
file, example available as
>> cp $RUNFILES/sapi.com . - don't
forget the dot at the end |
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edit sapi.com to
reflect your data file, change column labels if necessary |
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>>sh
sapi.com > sapi.log |
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look at peak list in
sapi.log for an outstanding set of peaks |
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Further
questions? Please e-mail the author
Quan Hao |
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SOLVE
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Find
heavy atom positions using SAD or MAD data |
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type "solvehelp" for the manual |
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type "solve" to start the program |
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Shake-and-Bake
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Find
heavy atom positions using SAD data |
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type "SnB"
or "BnP" to start up the Java interface |
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ARP/wARP Documentation |
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ARP/wARP is a software suite
for improvement and objective interpretation of crystallographic electron density
maps and automatic construction and refinement of macromolecular models |
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CNSsolve |
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Multiple
programs for structure solution and refinement |
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type "cns_web"
for Web interface (runs locally), including tutorial as well as
tools for use |
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type "cns_solve"
to run the program itself |
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FSEARCH
(CCP4) |
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Perform
upto 6 dimensional molecular (envelope) replacement search |
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ABS (CCP4) |
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Determine
the absolute configuration (hand) of the heavy atom substructure
and calculate an FOM |
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O: A Package for Protein
Crystallography |
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Map and
molecule display, model building |
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type
"start_o" and accept
all the default answers |
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coot |
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Model
building and refinement tool |
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type "coot" |
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pymol |
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Fancy
graphics: movies, rendering, and so much more..., |
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type "pymol" |
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MolScript |
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Program
for displaying molecular 3D structures, such as proteins, in
both schematic and detailed representations |
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