BL-2 viruses procedures

 home       

 
Getting Beam Time
 
MacCHESS
About MacCHESS
MacCHESS People
Research Highlights
Publications
Other related sites

 
Beam lines
A1 station
F1 station
F2 station
Beam Status

 
Visiting CHESS
Proposal Info
Express-Mode Proposal
On-line Tour/Quiz
Safety
Acknowledging MacCHESS

 
Experiment
Data collection
Data processing
Data backup
Software
How to

 
Troubleshooting
Troubleshooting guide
Technical information
Crystal centering problems

 
CHESS
CUinfo
Ithaca
Weather

 

 
 
 
 
 
 
 

searchchess : cuinfo : beam status : ithaca : weather

 

Procedures to be used with BL-2 viruses
 

In general, NIH/CDC guidelines for dealing with BL-2 material should be followed. Relevant practices for areas in which viruses will be handled include: 
 

No eating, drinking, smoking, applying contacts or cosmetics; no pipetting by mouth. Wear appropriate personal protective equipment (PPE) - at least gloves and lab coat. Wash hands after removing gloves or handling biohazardous material. Restrict personnel access while work with biohazards is in progress. Decontaminate work surfaces at least once a day.
 

 

Specific procedures for working with crystals at CHESS are given below:

 

Crystals of the virus will be brought to CHESS in a double-sealed, appropriately labeled container, as required by the DOT for transport of infectious materials. Crystallization trays or sealed capillaries, containing unfrozen crystals, will be surrounded with absorbent material and sealed within a sturdy outer container. Frozen crystals will be contained in vials enclosed in a Dewar or dry shipper; the container will be secured so that it cannot tip over.
 
 

Virus crystals will be usually be kept in the F-1 station. However, they may also be stored in another room, such as the cold room or the chemistry lab, if necessary (e.g. if crystals must be mounted in the cold or if they are being used at the A-1 or F-2 stations). The cognizant Safety Officer, or his/her designate, is to verify the nature and amount of viral materials brought by the user.
 
 

Biohazard warning signs will be placed on the doors of all rooms in which crystals will be stored or used. Access to areas in which crystals will be handled will be restricted to the investigators, the CHESS and MacCHESS operators, and members of the CHESS and LNS Safety Committees. If other personnel require access to such an area, the crystals shall be first contained in a suitable box, except for a crystal actually mounted on the oscillation camera.
 
 

Table and bench tops in the storage and mounting area will be covered with plastic-backed absorbent paper, which is soft enough so that any dropped capillary or crystal will not bounce off, and absorbent enough to soak up any spills. When crystals are actually being manipulated, it is recommended to cover the immediate area with absorbent paper wetted with disinfectant, so that any dropped crystal will be inactivated.
 
 

In the hutch, any surfaces on which a capillary or crystal might fall will be covered with plastic-backed absorbent paper. If frozen crystals are being used, any equipment which could be contaminated in case of failure of the cryosystem (e.g. the rotation stage) should be protected by a plastic shield which can be removed and decontaminated. Freezing of crystals directly into the cold stream is permitted, provided coverage of surfaces and equipment is adequate to catch any viral material which could be dropped in the mounting process. A germicidal lamp will be available in the hutch, in case decontamination is needed.
 
 

Mounting of crystals into capillaries, or freezing of crystals into liquid nitrogen (or other substance such as propane), will be performed in the room where the crystals are stored, or in the F-1 Biosafety Cabinet. Flammable materials such as propane are not to be used in the Biosafety Cabinet.
 
 

Loaded goniometer heads will be carried from the storage and mounting area into the hutch enclosed in sealed, non-breakable containers. If such a container is dropped, any spill of viral material will be contained within it. Crystals frozen in the storage and mounting area will be transported to the hutch in a container of liquid nitrogen which is enclosed in an outer container to catch any spills.
 
 

Because of the containment procedures given above, any spill (e.g. a dropped crystal or a broken capillary) should be limited to an absorbent paper-covered surface or the interior of a container. The users will clean up the spill, using bleach or other suitable disinfectant to decontaminate any places (e.g. absorbent paper or the inside of the outer container) where viral material might have landed. Broken capillaries are to be placed in a "sharps" container for later disposal. In the unlikely case of a spill which involves unprotected surfaces or equipment, or in which an aerosol may have been produced, the cognizant Safety Officer will be consulted to determine appropriate decontamination procedures. A reminder of procedures to follow in case of spills will be posted in the crystal mounting and storage area, and in the hutch.
 
 

Used capillaries are to be placed in a "sharps" container. Used frozen crystals are to be either disposed of in a biohazard bag (use disinfectant solution to wash a crystal out of a cryoloop into a small container and put the container in the bag, if the loop is to be salvaged) or stored in a Dewar, still frozen, for possible later use.
 
 

At the completion of their experiments, the users will roll up the absorbent paper and dispose of it in a biohazard bag. All surfaces which could have been contacted by virus will be washed with a suitable disinfectant, e.g. bleach or alcohol. The materials used for this cleanup, e.g. paper towels, will also be disposed of in the biohazard bag. Biohazard bags and sharps containers of used capillaries will be placed in a biohazard container (provided by CHESS) for later pickup by Cornell EH&S. The cognizant Safety Officer, or designate, is to verify that no biohazardous materials have been left at CHESS, except in the biohazard container.
 
  Guidelines last revised February 2001.
 
   

 

Last updated August, 2006

N I H logo - link to the National Institutes of Health