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MacCHESS user publications
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M. D. Lane, H.-J. Nam, E.
Padron, B. Gurda-Whitaker, E. Kohlbrenner, G. Aslanidi, B. Byrne, R.
McKenna, N. Muzyczka, S. Zolotukhin & M. Agbandje-McKenna. Production,
purification, crystallization and preliminary X-ray analysis of adeno-associated
virus serotype 8. Acta Cryst., F61, 558-561, (2005).
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Appleby, T. C., H. Luecke, et
al. (2005). Crystal Structure of Complete Rhinovirus RNA Polymerase
Suggests Front Loading of Protein Primer. J. Virol., 79(1),
277-288, (2005).
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Barton, W. A., D. Tzvetkova,
et al. Structure of the Angiopoietin-2 Receptor Binding Domain and
Identification of Surfaces Involved in Tie2 Recognition. Structure,
13(5), 825-832, (2005).
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S. Gourinath, N. Padhan, N.
Alam & A. Bhattacharya. Crystallization and preliminary crystallographic
analysis of calcium-binding protein-2 from Entamoeba histolytica and its
complexes with strontium and the IQ1 motif of myosin V. Acta Cryst.,
F61, 417-420, (2005).
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Benes, C. H., N. Wu, et al.
The C2 Domain of PKC\u03b4 Is a Phosphotyrosine Binding Domain. Cell
121(2), 271-280, (2005).
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Biswas, T., Aihara, H., et
al. A structural basis for allosteric control of DNA recombination
by[alpha]integrase. Nature, 435, 1059-1066,(2005).
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Chen, B., Vogan, M. E., et
al. Structure of an unliganded simian immunodeficiency virus gp120 core.
Nature, 433, 834-841, (2005).
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X. Mao & X. Chen.
Crystallization and X-ray crystallographic analysis of human STAT1.
Acta Cryst., F61, 666-668, (2005).
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Pant, K. and B. R. Crane.
Structure of a Loose Dimer: an Intermediate in Nitric Oxide Synthase
Assembly. J.Mol. Biology, In Press, (2005).
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Buddha, M. R. and B. R.
Crane. Structures of tryptophanyl-tRNA synthetase II from Deinococcus
radiodurans bound to ATP and tryptophan: Insight into subunit
cooperativity and domain motions linked to catalysis. J. Biol. Chem.,
M501568200, (2005).
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Das, K., P. J. Lewi, et al.
Crystallography and the design of anti-AIDS drugs: conformational
flexibility and positional adaptability are important in the design of
non-nucleoside HIV-1 reverse transcriptase inhibitors. Progress in
Biophysics and Molecular Biology, 88(2), 209-231, (2005).
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Dohm, J. A., M.-H. Hsu, et
al. Influence of Ions, Hydration, and the Transcriptional Inhibitor P4N
on the Conformations of the Sp1 Binding Site. J. Mol. Biology,
349(4), 731-744, (2005).
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Toms, A. V., Haas, A. L.,
Park, J.-H., Begley, T. P., Ealick, S. E. Structural Characterization of
the Regulatory Proteins TenA and TenI from Bacillus subtilis and
Identification of TenA as a Thiaminase II. Biochemistry, 44(7),
2319-2329, (2005).
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Zhang, Y., Colabroy, K. L..,
Begley, T. P., Ealick, S. E. Structural Studies on
3-Hydroxyanthranilate-3,4-dioxygenase: The Catalytic Mechanism of a
Complex Oxidation Involved in NAD Biosynthesis. Biochemistry,
44(21), 7632-7643, (2005).
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Fenn,T. D., Holyoak, T.,
Stamper, G. F., et al. Effect of a Y265F Mutant on the Transamination-Based
Cycloserine Inactivation of Alanine Racemase. Biochemistry,
44(14), 5317-6327, (2005).
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Ghosh, K., C. K. Lau, et al.
Peptide Trapping of the Holliday Junction Intermediate in Cre-loxP
Site-specific Recombination, J. Biol. Chem., 280(9), 8290-8299,
(2005).
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Gorrell, A., S. H. Lawrence,
et al. Structural and Kinetic Analyses of Arginine Residues in the
Active Site of the Acetate Kinase from Methanosarcina thermophila, J.
Biol. Chem., 280(11), 10731-10742, (2005).
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C. U. Kim, R. Kapfer & S. M.
Gruner. High-pressure cooling of protein crystals without
cryoprotectants. Acta Cryst., D61, 881-890, (2005.).
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Wang, J., Shen, B., Guo, M.,
et al. Blocking Effect and Crystal Structure of Natrin Toxin, a Cysteine-Rich
Secretory Protein from Naja atra Venom that Targets the BKCa Channel.
Biochemistry,44(30), 10145-10152, (2005).
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Huang, Q., Q. Liu, et al.
Crystal Structures of Fms1 and its Complex with Spermine Reveal
Substrate Specificity, J. Mol. Biology, 348(4), 951-959,
(2005).
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U. Englich, A. Kazimirov, Q.
Shen, D. H. Bilderback, S. M. Gruner & Q. Hao. Crystallographic data
collection using a 0.22% bandwidth multilayer. J. Synchrotron Rad.,
12M., 345-348, (2005).
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Adams, M. A. and Z. Jia.
Structural and Biochemical Evidence for an Enzymatic Quinone Redox Cycle
in Escherichia coli: IDENTIFICATION OF A NOVEL QUINOL MONOOXYGENASE,
J. Biol. Chem., 280(9), 8358-8363, (2005).
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J. J. Adams, G. Pal, K. Yam,
H. L. Spencer, Z. Jia & S. P. Smith. Purification and crystallization of
a trimodular complex comprising the type II cohesin-dockerin interaction
from the cellulosome of Clostridium thermocellum. Acta Cryst.,
F61, 46-48, (2005).
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Kim, J.-I., C. J. Lee, et al.
Crystal Structure of CD14 and Its Implications for Lipopolysaccharide
Signaling, J. Biol. Chem., 280(12), 11347-11351, (2005).
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Kuntz, D. A., A. Ghavami, et
al. Crystallographic analysis of the interactions of Drosophila
melanogaster Golgi [alpha]-mannosidase II with the naturally occurring
glycomimetic salacinol and its analogues, Tetrahedron.
Asymmetry, 16(1), 25-32, (2005).
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Lautenschlager, C., W. S.
Leal, et al. Coil-to-helix transition and ligand release of Bombyx mori
pheromone-binding protein. Biochemical and Biophysical Research
Communications, In Press, (2005).
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LeMagueres, P., Im, H.;
Ebalunode, J., et al. The 1.9 Crystal Structure of Alanine Racemase from
Mycobacterium tuberculosis Contains a Conserved Entryway into the Active
Site. Biochemistry, 44(5), 1471-1481, (2005).
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Li, S., K. R. Schmitz, et al.
Structural basis for inhibition of the epidermal growth factor receptor
by cetuximab, Cancer Cell, 7(4), 301-311, (2005).
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Li, Y., A. S. Fanning, et al.
Structure of the Conserved Cytoplasmic C-terminal Domain of Occludin:
Identification of the ZO-1 Binding Surface, J. Mol. Biology,
In Press, (2005).
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Mao, X., Z. Ren, et al.
Structural Bases of Unphosphorylated STAT1 Association and Receptor
Binding, Molecular Cell, 17(6), 761-771, (2005).
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Modis, Y., S. Ogata, et al.
Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type
3 Envelope Glycoprotein. J. Virol., 79(2), 1223-1231, (2005).
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Nam, H.-J., F. Poy, et al.
Structural basis for the function and regulation of the receptor protein
tyrosine phosphatase CD45. J. Exp. Med., 201(3), 441-452, (2005).
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Nikolov, D. B.; Li, C.; et
al. Crystal Structure of the Ephrin-B1 Ectodomain: Implications for
Receptor Recognition and Signaling. Biochemistry, 44(33),
10947-10953, (2005).
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Ruthenburg, A. J., D. M.
Graybosch, et al. A Superhelical Spiral in the Escherichia coli DNA
Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling. Bias,
J. Biol. Chem., 280(28), 26177-26184, (2005).
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Ryu, K.-S., J.-I. Kim, et al.
Structural Insights into the Monosaccharide Specificity of Escherichia
coli Rhamnose Mutarotase, J. Mol. Biology, 349(1), 153-162,
(2005).
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Quezada, C. M., D. J. Hamel,
et al. Structural and chemical requirements for histidine
phosphorylation by the chemotaxis kinase CheA. J. Biol. Chem.,
M505316200, (2005).
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Schultz, L. W., L. Liu, et
al. Crystal structure of a pH-regulated luciferase catalyzing the
bioluminescent oxidation of an open tetrapyrrole. PNAS, 102(5),
1378-1383, (2005).
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Shi, D., H. Morizono, et al.
Crystal Structure of N-Acetylornithine Transcarbamylase from Xanthomonas
campestris: A NOVEL ENZYME IN A NEW ARGININE BIOSYNTHETIC PATHWAY FOUND
IN SEVERAL EUBACTERIA. J. Biol. Chem., 280(15), 14366-14369,
(2005).
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Sun, J.-P.; Wang, W.-Q.; et
al. Structure and Biochemical Properties of PRL-1, a Phosphatase
Implicated in Cell Growth, Differentiation, and Tumor Invasion.
Biochemistry, (2005).
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Y. Kalinin, J. Kmetko, A.
Bartnik, A. Stewart, R. Gillilan, E. Lobkovsky & R. Thorne A new
sample mounting technique for room-temperature macromolecular
crystallography. J. Appl. Cryst., 38, 333-339, (2005).
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Zang, Y., W.-H. Wang, et al.
Identification of a Subversive Substrate of Trichomonas vaginalis Purine
Nucleoside Phosphorylase and the Crystal Structure of the
Enzyme-Substrate Complex. J. Biol. Chem., 280(23), 22318-22325,
(2005).
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Vedula, L. S., Rynkiewicz, M.
J. el at. Molecular Recognition of the Substrate Diphosphate Group
Governs Product Diversity in Trichodiene Synthase Mutants.
Biochemistry, 44(16), 6153-6163, (2005).
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Anirban Banerjee, Wei Yang, Martin Kapplus & Gregory L. Verdine.
Structure of a repair enzyme interrogating undamaged DNA elucidates
recognition of damaged DNA. Nature, 434, 612 - 618, ( 2005).
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Mavis Agbandje-McKenna. Structural
Studies of Adeno-associated Virus Serotypes Towards the Development of
Targeted Viral Gene Therapy Vectors. Proceedings CHESS User's Meeting,
Cornell University, Ithaca, NY, June 15-16 Invited Abstract, 10
(2004).
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Yu, Y., Liu, Y., Shen, N., Xu, X., Xu,
F., Jia, J., Jin, Y., Arnold, E., and Ding, J. Crystal Structure of
Human Tryptophanyl-tRNA Synthetase Catalytic Fragment: INSIGHTS INTO
SUBSTRATE RECOGNITION, tRNA BINDING, AND ANGIOGENESIS ACTIVITY. J.
Biol. Chem., 279, 8378-8388, (2004).
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Xu, X., Zhao, J., Xu, Z., Peng, B.,
Huang, Q., Arnold, E., and Ding, J. Structures of Human Cytosolic NADP-dependent
Isocitrate Dehydrogenase Reveal a Novel Self-regulatory Mechanism of
Activity. J. Biol. Chem., 279, 33946-33957, (2004).
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Das, K., Acton, T., Chiang, Y., Shih, L.,
Arnold, E., and Montelione, G. T. Crystal structure of RlmAI:
Implications for understanding the 23S rRNA G745/G748-methylation at the
macrolide antibiotic-binding site. PNAS, 101, 4041-4046, (2004).
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Das, K., Butler, G. H., Kwiatkowski, V.,
Clark, J., Arthur D., Yadav, P., and Arnold, E. Crystal Structures of
Arginine Deiminase with Covalent Reaction Intermediates: Implications
for Catalytic Mechanism. Structure, 12, 657-667, (2004).
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Sarafianos, S. G., Das, K., Hughes, S.
H., and Arnold, E. Taking aim at a moving target: designing drugs to
inhibit drug-resistant HIV-1 reverse transcriptases. Current Opinion
in Structural Biology, 14, 716-730, (2004).
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Ceccarelli, C., Liang, Z.-X., Strickler,
M., Prehna, G., Goldstein, B. M., Klinman, J. P., and Bahnson, B. J.
Crystal Structure and Amide H/D Exchange of Binary Complexes of Alcohol
Dehydrogenase from Bacillus stearothermophilus: Insight into
Thermostability and Cofactor Binding. Biochemistry 43, 5266-5277,
(2004).
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C. Schmidt, K. Rickers, D. H. Bilderback,
R. Huang & G. Falkenberg. In-situ determination of mineral solubilities
using a diamond-anvil cell and SR-XRF: advantages of applying a single
bounce capillary. Submitted as user contribution to Hasylab 2004
annual report , (2004).
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G. Falkenberg, K. Rickers, D. H.
Bilderback and R. Huang. A Single-bounce Capillary for Focusing of Hard
X-rays. Technical Improvements at HASYLAB section of the Hasylab 2004
annual report, submitted, (2004).
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R. Huang and D. H. Bilderback.
Single-Bounce Monocapillaries for Focusing Synchrotron Radiation:
Modeling, Measurements and Theoretical Limits. Journal of Synchrotron
Radiation, submitted, (2004).
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R. Huang and D. H. Bilderback. Secondary
Focusing for Micro-Diffraction Using One-Bounce Capillaries CP705.
Synchrotron Radiation Instrumentation: Eight International
Conference, edited by T. Warwick, et al. American Institute of Physics ,
712-715, (2004).
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Leung, A. K. W., Lucile White, E., Ross,
L. J., Reynolds, R. C., DeVito, J. A., and Borhani, D. W. Structure of
Mycobacterium tuberculosis FtsZ Reveals Unexpected, G Protein-like
Conformational Switches. J. Mol. Biology, 342, 953-970, (2004).
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Li, L., and Bouvier, M. Structures of HLA-A*1101
Complexed with Immunodominant Nonamer and Decamer HIV-1 Epitopes Clearly
Reveal the Presence of a Middle, Secondary Anchor Residue. J. Immunol,.
172, 6175-6184, (2004).
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Brautigam, C. A., Chelliah, Y., and
Deisenhofer, J. Tetramerization and ATP Binding by a Protein Comprising
the A, B, and C Domains of Rat Synapsin I. J. Biol. Chem., 279,
11948-11956, (2004).
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Yeh, J. I., Charrier, V., Paulo, J., Hou,
L., Darbon, E., Claiborne, A., Hol, W. G. J., and Deutscher, J.
Structures of Enterococcal Glycerol Kinase in the Absence and Presence
of Glycerol: Correlation of Conformation to Substrate Binding and a
Mechanism of Activation by Phosphorylation. Biochemistry, 43,
362-373, (2004).
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Misquitta, Y., Cherezov, V., Havas, F.,
Patterson, S., Mohan, J. M., Wells, A. J., Hart, D. J., and Caffrey, M.
Rational design of lipid for membrane protein crystallization. Journal
of Structural Biology, 148, 169-175,
(2004).
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Misquitta, L. V., Misquitta, Y., Cherezov,
V., Slattery, O., Mohan, J. M., Hart, D., Zhalnina, M., Cramer, W. A.,
and Caffrey, M. Membrane Protein Crystallization in Lipidic Mesophases
with Tailored Bilayers. Structure, 12, 2113-2124, (2004).
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Gomez, G. A., Morisseau, C., Hommock, B.
D., and Christianson, D. W. Structure of Human Epoxide Hydrolase Reveals
Mechanistic Inferences on Bifunctional Catalysis in Epoxide and
Phosphate Ester Hydrolysis. Biochemistry, 43, 4716-4723, (2004).
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Risal, D., Gourinath, S., Himmel, D. M.,
Szent-Gyorgyi, A. G., and Cohen, C. Myosin subfragment 1 structures
reveal a partially bound nucleotide and a complex salt bridge that helps
couple nucleotide and actin binding. PNAS, 101, 8930-8935,
(2004).
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Park, S.-Y., Beel, B. D., Simon, M. I.,
Bilwes, A. M., and Crane, B. R. In different organisms, the mode of
interaction between two signaling proteins is not necessarily conserved.
PNAS, 101, 11646-11651, (2004).
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Seong A. Kang, Pieti J. Marjavaara, Brian
R. Crane. Electron transfer between cytochrome c and cytochrome c
peroxidase in single crystals. J. Am. Chem. Soc., Submitted,
(2004).
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Buddha, R. M. and Crane R. B. (2005).
Structure and activity of an aminoacyl-tRNA synthetase that charges tRNA
with nitro-tryptophan, Nature Structural & Molecular Biology, 12,
274-275, ( 2004).
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Kang, S. A., Marjavaara, P. J., and
Crane, B. R. Electron Transfer between Cytochrome c and Cytochome c
Peroxidase in Single Crystals. J. Am. Chem. Soc., 126,
10836-10837, (2004).
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Quezada, C. M., Gradinaru, C., Simon, M.
I., Bilwes, A. M., and Crane, B. R. Helical Shifts Generate Two Distinct
Conformers in the Atomic Resolution Structure of the CheA
Phosphotransferase Domain from Thermotoga maritima. Journal of Molecular
Biology 341, 1283-1294, (2004).
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Park, S.-Y., Chao, X., Gonzalez-Bonet,
G., Beel, B. D., Bilwes, A. M., and Crane, B. R. Structure and
Function of an Unusual Family of Protein Phosphatases: The Bacterial
Chemotaxis Proteins CheC and CheX. Molecular Cell, 16, 563-574,
(2004).
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Lacy, D. B., Wigelsworth, D. J., Scobie,
H. M., Young, J. A. T., and Collier, R. J. Crystal structure of the von
Willebrand factor A domain of human capillary morphogenesis protein 2:
An anthrax toxin receptor. PNAS 101, 6367-6372, (2004).
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Lacy, D. B., Wigelsworth, D. J., Melnyk,
R. A., Harrison, S. C., and Collier, R. J. Structure of heptameric
protective antigen bound to an anthrax toxin receptor: A role for
receptor in pH-dependent pore formation. PNAS, 101, 13147-13151,
(2004).
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Moldoveanu, T., Campbell, R. L., Cuerrier,
D., and Davies, P. L. Crystal Structures of Calpain-E64 and -Leupeptin
Inhibitor Complexes Reveal Mobile Loops Gating the Active Site. J.
Mol. Biology, 343, 1313-1326, (2004).
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Bauer J. A., Bennett E. M., Begley T. P.,
and Ealick S. E. Three-Dimensional Structure of YaaE from Bacillus
subtilis, A Glutaminase Implicated in Pyridoxal-5`-phosphate
Biosynthesis. J. Biol. Chem., 279, 2704-11, (2004).
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Settembre, E. C., Chittuluru, J. R.,
Mill, C. P., Kappock, T. J., and Ealick, S. E. Acidophilic
adaptations in the structure of Acetobacter aceti
N5-carboxyaminoimidazole ribonucleotide mutase (PurE). Acta
Crystallographica, Section D 60, 1753-1760, (2004).
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Zhang, Y., Cottet, S. E., and Ealick, S.
E. Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to
Nucleoside Phosphorylases. Structure, 12, 1383-1394, (2004).
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Zhang, Y., Dougherty, M., Downs, D. M.,
and Ealick, S. E. Crystal Structure of an Aminoimidazole Riboside Kinase
from Salmonella enterica: Implications for the Evolution of the
Ribokinase Superfamily. Structure, 12, 1809-1821, (2004).
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Anand, R., Hoskins, A. A., Stubbe, J.,
and Ealick, S. E. Domain Organization of Salmonella typhimurium
Formylglycinamide Ribonucleotide Amidotransferase Revealed by X-ray
Crystallography. Biochemistry, 43, 10328-10342, (2004).
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Toms, A. V., Kinsland, C., McCloskey, D.
E., Pegg, A. E., and Ealick, S. E. Evolutionary Links as Revealed by the
Structure of Thermotoga maritima S-Adenosylmethionine Decarboxylase.
J. Biol. Chem., 279, 33837-33846, (2004).
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Eck, Michael. Structure of a Formin
Homology-2 Domain. Proceedings CHESS User`s Meeting, Cornell
University, Ithaca, NY, June 15-16, Invited Abstract, 11 (2004).
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Xu Y, Moseley J.,B., Sagot I., Poy F.,
Pellman D., Goode B. L., Eck M. J. Crystal structures of a formin
homology-2 domain reveal a tethered dimer architecture. Cell,
116(5), 711-23, (2004).
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Dutta, S., Li, Y., Johnson, D., Dzantiev,
L., Richardson, C. C., Romano, L. J., and Ellenberger, T. Crystal
structures of 2-acetylaminofluorene and 2-aminofluorene in complex with
T7 DNA polymerase reveal mechanisms of mutagenesis. PNAS, 101,
16186-16191, (2004).
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Li, Y., Dutta, S., Doublie, S., Bdour, H.
M. d., Taylor, J.-S., and Ellenberger, T. Nucleotide insertion opposite
a cis-syn thymine dimer by a replicative DNA polymerase from
bacteriophage T7. Nature Structural & Molecular Biology, 11,
784-790, (2004).
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Adams, T. E., Hockin, M. F., Mann, K. G.,
and Everse, S. J. The crystal structure of activated protein
C-inactivated bovine factor Va: Implications for cofactor function.
PNAS, 101, 8918-8923, (2004).
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Halbrooks, P. J., Mason, A. B., Adams, T.
E., Briggs, S. K., and Everse, S. J. The Oxalate Effect on Release of
Iron from Human Serum Transferrin Explained. J. Mol. Biology,
339, 217-226, (2004).
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Richard Gillilan. Digital Sample
Visualizaton and Fluorescent Microfiber Alignment: New Tools at
MacCHESS. Proceedings CHESS User`s Meeting, Cornell University,
Ithaca, NY, June 15-16, Abstract, 22, (2004).
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Qingqiu Huang, Qun Liu and Quan Hao. The
Crystal Structure of Fms1 Reveals the Substrate Specificity of Polyamine
Oxidase. Proceedings CHESS User`s Meeting, Cornell University,
Ithaca, NY, June 15-16, Abstract, (2004).
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Xiang T, Liu Q, Deacon A. M., Koshy M.,
Kriksunov I. A., Lei X., Hao Q. & Thiel D. J. Crystal Structure of a
Heat-resilient Phytase from Aspergillus fumigatus, Carrying a
Phosphorylated Histidine. J. Mol. Biol., 339, 437-445, (2004).
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H. Zhang, M. Teng, L. Niu, Y. Wang, Y.
Wang, Q. Liu, Q. Huang, Q. Hao, Y. Dong and P. Liu. Purification,
partial characterization, crystallization and structural determination
of AHP-LAAO, a novel L-amino-acid oxidase with cell apoptosis-inducing
activity from Agkistrodon halys pallas venom. Acta Cryst., D60,
974-977, (2004).
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Lou, X., Liu, Q., Tu, X., Wang, J., Teng,
M., Niu, L., Schuller, D. J., Huang, Q., and Hao, Q. The Atomic
Resolution Crystal Structure of Atratoxin Determined by Single
Wavelength Anomalous Diffraction Phasing. J Biol. Chem.,
279, 39094-39104, (2004).
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J. Wang, M. Guo, X. Tu, D. Zheng, M. Teng,
L. Niu, Q. Liu, Q. Huang and Q. Hao
Purification, partial characterization, crystallization and preliminary
X-ray diffraction of two cysteine-rich secretory proteins from Naja atra
and Trimeresurus stejnegeri venoms
Acta Cryst., D60, 1180-1111, (2004).
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Love M. L., Szebenyi D. M. E., Kriksunov
I. A., Thiel D. J., Munshi C., Graeff R., Lee H. C., Hao Q. ADP-ribosyl
cyclase: crystal structures reveal a covalent intermediate. Structure, 12,
477-486, (2004).
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Hao, Q. ABS: a program to determine
absolute configuration and evaluate anomalous scatterer substructure.
J. Appl. Crystallography, 37, 498-499, (2004).
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Liu, Q., Huang, Q., Lei, X. G., and Hao,
Q. Crystallographic Snapshots of Aspergillus fumigatus Phytase,
Revealing Its Enzymatic Dynamics. Structure, 12, 1575-1583.
(2004).
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Xu, G., Teng, M., Niu, L., Liu, P., Dong,
Y., Liu, Q., Huang, Q., and Hao, Q. Purification, characterization,
crystallization and preliminary X-ray crystallographic analysis of two
novel C-type lectin-like proteins: Aall-A and Aall-B from
Deinagkistrodon acutus venom. Acta Crystallographica, Section D
60, 2035-2037, (2004).
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Ekaterina E. Heldwein ,
Eric Macia,
Jing Wang ,
Helen L. Yin,
Tomas Kirchhausen
and Stephen C. Harrison. Crystal
structure of the clathrin adaptor protein 1 core. PNAS,
101, 14108-14113, (2004).
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